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4B61
Asym. Unit
Info
Asym.Unit (314 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
IN MESO STRUCTURE OF ALGINATE TRANSPORTER, ALGE, FROM PSEUDOMOAS AERUGINOSA, PAO1. CRYSTAL FORM 3.
Authors
:
J. Tan, V. E. Pye, D. Aragao, M. Caffrey
Date
:
08 Aug 12 (Deposition) - 17 Jul 13 (Release) - 30 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Membrane Protein, Outer Membrane, In Meso Crystallisation, Lipidic Cubic Phase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Tan, S. L. Rouse, D. Li, V. E. Pye, L. Vogeley, A. R. Brinth, T. El Arnaout, J. C. Whitney, P. L. Howell, M. S. P. Sansom, M. Caffrey
A Conformational Landscape For Alginate Secretion Across The Outer Membrane Of Pseudomonas Aeruginosa.
Acta Crystallogr. , Sect. D V. 70 2054 2014
[
close entry info
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Hetero Components
(6, 31)
Info
All Hetero Components
1a: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ma)
1b: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mb)
1c: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mc)
1d: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Md)
1e: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Me)
1f: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mf)
1g: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mg)
1h: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mh)
1i: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mi)
1j: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mj)
1k: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mk)
1l: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ml)
1m: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mm)
1n: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mn)
1o: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mo)
1p: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mp)
1q: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mq)
1r: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mr)
1s: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Ms)
1t: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mt)
1u: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mu)
1v: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Mv)
2a: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Na)
2b: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTA... (78Nb)
3a: ACETATE ION (ACTa)
4a: COPPER (II) ION (CUa)
4b: COPPER (II) ION (CUb)
4c: COPPER (II) ION (CUc)
4d: COPPER (II) ION (CUd)
5a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
6a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
78M
22
Ligand/Ion
(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
2
78N
2
Ligand/Ion
(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
3
ACT
1
Ligand/Ion
ACETATE ION
4
CU
4
Ligand/Ion
COPPER (II) ION
5
LDA
1
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
6
MG
1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:41 , PHE A:42 , ALA A:77 , PHE A:78 , GLY A:79 , PHE A:88 , PHE A:131 , TRP A:132
BINDING SITE FOR RESIDUE 78M A1492
02
AC2
SOFTWARE
LEU A:430 , GLY A:462 , GLY A:463 , LEU A:464 , THR A:478 , HIS A:480
BINDING SITE FOR RESIDUE 78M A1493
03
AC3
SOFTWARE
ASP A:321 , TRP A:324 , 78M A:1496 , 78N A:1506
BINDING SITE FOR RESIDUE 78M A1494
04
AC4
SOFTWARE
ALA A:94 , ALA A:95 , TRP B:280
BINDING SITE FOR RESIDUE 78M B1491
05
AC5
SOFTWARE
PHE B:148 , GLU B:166 , ALA B:167
BINDING SITE FOR RESIDUE 78M B1492
06
AC6
SOFTWARE
ALA B:127 , TYR B:190 , ARG B:191
BINDING SITE FOR RESIDUE 78M B1493
07
AC7
SOFTWARE
TRP A:318 , ILE A:320 , 78M A:1496
BINDING SITE FOR RESIDUE 78M A1495
08
AC8
SOFTWARE
78M A:1494 , 78M A:1495 , TYR B:141 , PHE B:172 , THR B:174
BINDING SITE FOR RESIDUE 78M A1496
09
AC9
SOFTWARE
VAL A:207
BINDING SITE FOR RESIDUE 78M A1498
10
BC1
SOFTWARE
THR A:96 , ASN B:308 , PHE B:310
BINDING SITE FOR RESIDUE 78M B1494
11
BC2
SOFTWARE
GLY B:43 , PHE B:490
BINDING SITE FOR RESIDUE 78M B1495
12
BC3
SOFTWARE
ILE A:225 , THR A:253 , ALA B:92 , LEU B:126
BINDING SITE FOR RESIDUE 78M B1496
13
BC4
SOFTWARE
PHE B:208
BINDING SITE FOR RESIDUE 78M B1497
14
BC5
SOFTWARE
PHE A:148 , ALA A:167
BINDING SITE FOR RESIDUE 78M A1500
15
BC6
SOFTWARE
ILE B:211 , THR B:213 , VAL B:223
BINDING SITE FOR RESIDUE 78M B1498
16
BC7
SOFTWARE
LEU B:177 , ILE B:211
BINDING SITE FOR RESIDUE 78M A1501
17
BC8
SOFTWARE
ALA A:127 , ALA A:128 , TYR A:190 , ARG A:191 , THR A:192 , LEU A:194
BINDING SITE FOR RESIDUE LDA A1502
18
BC9
SOFTWARE
ALA A:136 , THR A:139 , TYR A:141 , GLU A:144 , HOH A:2019
BINDING SITE FOR RESIDUE MG A1503
19
CC1
SOFTWARE
HIS A:218 , ACT A:1508 , HOH A:2112
BINDING SITE FOR RESIDUE CU A1504
20
CC2
SOFTWARE
ASP A:55 , ASP A:57 , ALA A:61 , GLY A:63
BINDING SITE FOR RESIDUE CU A1505
21
CC3
SOFTWARE
ASP B:55 , ASP B:57 , ALA B:61 , GLY B:63
BINDING SITE FOR RESIDUE CU B1499
22
CC4
SOFTWARE
HIS B:145 , HOH B:2026 , HOH B:2027 , HOH B:2090
BINDING SITE FOR RESIDUE CU B1500
23
CC5
SOFTWARE
ASN A:308 , ALA A:309 , PHE A:310 , ARG A:332 , GLU A:342 , ASN B:67 , ILE B:69 , THR B:96
BINDING SITE FOR RESIDUE 78M B1501
24
CC6
SOFTWARE
TRP A:215 , ILE B:48 , PHE B:438 , LYS B:439 , GLN B:440 , VAL B:484 , TRP B:488
BINDING SITE FOR RESIDUE 78M B1502
25
CC7
SOFTWARE
PRO B:39 , ASN B:41 , PHE B:78 , GLY B:79 , GLN B:80 , TRP B:81 , ALA B:86 , TYR B:87 , PHE B:131 , TRP B:132 , HOH B:2001 , HOH B:2091
BINDING SITE FOR RESIDUE 78M B1503
26
CC8
SOFTWARE
GLY A:384 , LEU A:388 , TYR A:392 , 78M A:1494 , 78N A:1507 , ASP B:83 , TRP B:84 , TYR B:135
BINDING SITE FOR RESIDUE 78N A1506
27
CC9
SOFTWARE
TYR A:392 , ILE A:458 , PHE A:460 , 78N A:1506
BINDING SITE FOR RESIDUE 78N A1507
28
DC1
SOFTWARE
PRO A:217 , HIS A:218 , CU A:1504
BINDING SITE FOR RESIDUE ACT A1508
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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