4AVB - JenaLib

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Title :   CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 IN COMPLEX WITH ACETYL COA AND CAMP

Authors :   H. J. Lee, P. T. Lang, S. M. Fortune, C. M. Sassetti, T. Alber

Date :   24 May 12 (Deposition) - 11 Jul 12 (Release) - 22 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, Allosteric Regulation, Domain Coupling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Lee, P. T. Lang, S. M. Fortune, C. M. Sassetti, T. Alber
Cyclic Amp Regulation Of Protein Lysine Acetylation In Mycobacterium Tuberculosis.
Nat. Struct. Mol. Biol. V. 19 811 2012
PubMed-ID: 22773105 | Reference-DOI: 10.1038/NSMB.2318

Molecule 1 - LYSINE ACETYLTRANSFERASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 18)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A
2	ACT	1	Ligand/Ion	ACETATE ION
3	CMP	2	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
4	EDO	8	Ligand/Ion	1,2-ETHANEDIOL
5	PEG	5	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (4, 7)

No.	Name	Count	Type	Full Name
1	ACO	1	Ligand/Ion	ACETYL COENZYME *A
2	ACT	-1	Ligand/Ion	ACETATE ION
3	CMP	1	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
4	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
5	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (5, 11)

No.	Name	Count	Type	Full Name
1	ACO	1	Ligand/Ion	ACETYL COENZYME *A
2	ACT	1	Ligand/Ion	ACETATE ION
3	CMP	1	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
4	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
5	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:67 , ALA A:79 , ARG A:80 , VAL A:87 , GLY A:88 , GLU A:89 , ILE A:90 , ALA A:91 , ARG A:98 , SER A:99 , ALA A:100 , VAL A:102 , ARG A:138 , PHE A:142 , HOH A:2091 , HOH A:2269 , HOH A:2270	BINDING SITE FOR RESIDUE CMP A 400
02	AC2	SOFTWARE	VAL A:70 , HOH A:2047	BINDING SITE FOR RESIDUE EDO A1333
03	AC3	SOFTWARE	LEU A:274 , SER A:275 , ASP A:276 , GLY A:297 , HOH A:2180 , HOH A:2242 , ARG B:80	BINDING SITE FOR RESIDUE EDO A1334
04	AC4	SOFTWARE	GLU A:52 , PRO A:53 , VAL A:55 , VAL B:12 , ARG B:315	BINDING SITE FOR RESIDUE EDO A1335
05	AC5	SOFTWARE	ASP A:19 , GLN A:22 , THR A:134 , HOH A:2006 , HOH A:2124 , HOH A:2272	BINDING SITE FOR RESIDUE EDO A1336
06	AC6	SOFTWARE	PRO A:145 , MET A:157 , ARG A:159 , THR A:213 , GLY A:215 , PEG B:1337	BINDING SITE FOR RESIDUE PEG A1337
07	AC7	SOFTWARE	THR A:180 , ARG A:183 , ILE A:236 , ALA A:237 , PHE A:238 , THR A:239 , VAL A:240 , GLN A:245 , GLY A:246 , ARG A:247 , GLY A:248 , ILE A:249 , GLY A:250 , SER A:251 , ARG A:272 , MET A:273 , ASN A:277 , VAL A:278 , PRO A:279 , THR A:282 , ILE A:283 , ARG A:286 , HOH A:2224 , HOH A:2226 , HOH A:2227 , HOH A:2273 , ARG B:286 , ACO B:1342	BINDING SITE FOR RESIDUE ACO A1338
08	AC8	SOFTWARE	VAL B:67 , ALA B:79 , ARG B:80 , VAL B:87 , GLY B:88 , GLU B:89 , ILE B:90 , ALA B:91 , ARG B:98 , SER B:99 , ALA B:100 , VAL B:102 , ARG B:138 , PHE B:142 , EDO B:1336 , HOH B:2067 , HOH B:2072	BINDING SITE FOR RESIDUE CMP B 400
09	AC9	SOFTWARE	HIS B:173 , ILE B:174 , GLN B:175 , ALA B:241 , ASP B:242 , ALA B:243 , HOH B:2214	BINDING SITE FOR RESIDUE EDO B1333
10	BC1	SOFTWARE	ARG B:94 , GLN B:327 , HOH B:2103	BINDING SITE FOR RESIDUE EDO B1334
11	BC2	SOFTWARE	GLY B:126 , GLU B:129 , ARG B:130 , ARG B:133	BINDING SITE FOR RESIDUE EDO B1335
12	BC3	SOFTWARE	GLN B:137 , ARG B:138 , PRO B:163 , CMP B:400 , HOH B:2097 , HOH B:2100 , HOH B:2102	BINDING SITE FOR RESIDUE EDO B1336
13	BC4	SOFTWARE	GLY A:215 , PEG A:1337 , HOH A:2211 , VAL B:190 , SER B:192 , PRO B:193	BINDING SITE FOR RESIDUE PEG B1337
14	BC5	SOFTWARE	ARG B:133 , GLN B:137 , GLU B:201 , HOH B:2094 , HOH B:2096 , HOH B:2101 , HOH B:2161 , HOH B:2217	BINDING SITE FOR RESIDUE PEG B1338
15	BC6	SOFTWARE	TYR B:287 , MET B:302 , ILE B:303 , ASP B:304 , PRO B:306	BINDING SITE FOR RESIDUE PEG B1339
16	BC7	SOFTWARE	ARG B:184 , GLU B:235 , ILE B:236 , ALA B:270 , ALA B:271 , ARG B:272 , ACT B:1341 , ACO B:1342 , HOH B:2142	BINDING SITE FOR RESIDUE PEG B1340
17	BC8	SOFTWARE	ARG B:223 , GLU B:235 , PEG B:1340 , HOH B:2146 , HOH B:2159	BINDING SITE FOR RESIDUE ACT B1341
18	BC9	SOFTWARE	THR A:282 , ARG A:286 , ACO A:1338 , THR B:180 , ARG B:183 , ILE B:236 , ALA B:237 , PHE B:238 , THR B:239 , VAL B:240 , GLN B:245 , GLY B:246 , ARG B:247 , GLY B:248 , ILE B:249 , GLY B:250 , SER B:251 , ARG B:272 , ASN B:277 , VAL B:278 , PRO B:279 , THR B:282 , ARG B:286 , PEG B:1340 , HOH B:2177 , HOH B:2179 , HOH B:2180 , HOH B:2194	BINDING SITE FOR RESIDUE ACO B1342

(no "SS Bond" information available for 4AVB)

(no "Cis Peptide Bond" information available for 4AVB)

(no "SAP(SNP)/Variant" information available for 4AVB)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	PAT_MYCTU	20-122	2	A:20-122 B:20-122
2	CNMP_BINDING_2	PS00889	Cyclic nucleotide-binding domain signature 2.	PAT_MYCTU	87-104	2	A:87-104 B:87-104
3	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	PAT_MYCTU	156-318	2	A:156-318 B:156-318

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	PAT_MYCTU	20-122	1	A:20-122 -
2	CNMP_BINDING_2	PS00889	Cyclic nucleotide-binding domain signature 2.	PAT_MYCTU	87-104	1	A:87-104 -
3	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	PAT_MYCTU	156-318	1	A:156-318 -

Biological Unit 2 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	PAT_MYCTU	20-122	1	- B:20-122
2	CNMP_BINDING_2	PS00889	Cyclic nucleotide-binding domain signature 2.	PAT_MYCTU	87-104	1	- B:87-104
3	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	PAT_MYCTU	156-318	1	- B:156-318

(no "Exon" information available for 4AVB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:324
 aligned with PAT_MYCTU | O05581 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:324
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328    
            PAT_MYCTU     9 GARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLMLRPVLPGDRERTVHGHIQFSGETLYRRFMSARVPSPALMHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARMLSDNVPMRTIMDRYGAVWQREDVGVITTMIDVPGPGELSLGREMVDQINRVARQVIEAV 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..hhhhhhhhhhhheeeee....eee........eeeeee..eeeeee.....eeeeee....ee.hhhhhhh.....eeee...eeeeeehhhhhhhhhhh.hhhhhhhhhhhhhhhh....eeee.....eeeeee...hhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhh.....eeeeeee....eeeeeeeee......eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhh.....ee....eeeeeee.........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----------CNMP_BINDING_3  PDB: A:20-122 UniProt: 20-122                                                          ---------------------------------GNAT  PDB: A:156-318 UniProt: 156-318                                                                                                                              -------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CNMP_BINDING_2    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4avb A   9 GARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLMLRPVLPGDRERTVHGHIQFSGETLYRRFMSARVPSPALMHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARMLSDNVPMRTIMDRYGAVWQREDVGVITTMIDVPGPGELSLGREMVDQINRVARQVIEAV 332
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328

Chain B from PDB  Type:PROTEIN  Length:324
 aligned with PAT_MYCTU | O05581 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:324
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328    
            PAT_MYCTU     9 GARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLMLRPVLPGDRERTVHGHIQFSGETLYRRFMSARVPSPALMHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARMLSDNVPMRTIMDRYGAVWQREDVGVITTMIDVPGPGELSLGREMVDQINRVARQVIEAV 332
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..hhhhhhhhhhhheeeee....eee........eeeeee..eeeeee.....eeeeee....eehhhhhhhh.....eeee...eeeeeehhhhhhhhhh..hhhhhhhhhhhhhhhh....eeee.....eeeeee...hhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhh.....eeeeeee....eeeeeeeee......eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh....ee....eeeeeee..hhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -----------CNMP_BINDING_3  PDB: B:20-122 UniProt: 20-122                                                          ---------------------------------GNAT  PDB: B:156-318 UniProt: 156-318                                                                                                                              -------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------CNMP_BINDING_2    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4avb B   9 GARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLMLRPVLPGDRERTVHGHIQFSGETLYRRFMSARVPSPALMHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARMLSDNVPMRTIMDRYGAVWQREDVGVITTMIDVPGPGELSLGREMVDQINRVARQVIEAV 332
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AVB)

(no "CATH Domain" information available for 4AVB)

(no "Pfam Domain" information available for 4AVB)

Asymmetric Unit(hide GO term definitions)

Chain A,B (PAT_MYCTU | O05581)


GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
GO:0016407	acetyltransferase activity	Catalysis of the transfer of an acetyl group to an acceptor molecule.
GO:0030552	cAMP binding	Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4avb)

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4ava	CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 FROM MYCOBACTERIUM TUBERCULOSIS
4avc	CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 IN COMPLEX WITH ACETYL COA AND CAMP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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