4AVC - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 IN COMPLEX WITH ACETYL COA AND CAMP

Authors :   H. J. Lee, P. T. Lang, S. M. Fortune, C. M. Sassetti, T. Alber

Date :   24 May 12 (Deposition) - 11 Jul 12 (Release) - 22 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.81

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, Acetyltransferase, Allosteric Regulation, Domain Coupling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Lee, P. T. Lang, S. M. Fortune, C. M. Sassetti, T. Alber
Cyclic Amp Regulation Of Protein Lysine Acetylation In Mycobacterium Tuberculosis.
Nat. Struct. Mol. Biol. V. 19 811 2012
PubMed-ID: 22773105 | Reference-DOI: 10.1038/NSMB.2318

Molecule 1 - LYSINE ACETYLTRANSFERASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 30)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A
2	CMP	2	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	22	Mod. Amino Acid	SELENOMETHIONINE
5	PEG	3	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (4, 14)

No.	Name	Count	Type	Full Name
1	ACO	1	Ligand/Ion	ACETYL COENZYME *A
2	CMP	1	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
5	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (5, 16)

No.	Name	Count	Type	Full Name
1	ACO	1	Ligand/Ion	ACETYL COENZYME *A
2	CMP	1	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	11	Mod. Amino Acid	SELENOMETHIONINE
5	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:79 , MSE A:85 , VAL A:87 , GLY A:88 , GLU A:89 , ILE A:90 , ALA A:91 , ARG A:98 , SER A:99 , ALA A:100 , VAL A:102 , ARG A:138 , PHE A:142	BINDING SITE FOR RESIDUE CMP A 400
2	AC2	SOFTWARE	ARG B:80 , VAL B:87 , GLY B:88 , GLU B:89 , ILE B:90 , ALA B:91 , ARG B:98 , SER B:99 , ALA B:100 , ARG B:138 , PHE B:142	BINDING SITE FOR RESIDUE CMP B 400
3	AC3	SOFTWARE	THR B:180 , ARG B:183 , ILE B:236 , ALA B:237 , PHE B:238 , THR B:239 , VAL B:240 , GLN B:245 , GLY B:246 , ARG B:247 , GLY B:248 , ILE B:249 , GLY B:250 , SER B:251 , ARG B:272 , ASN B:277 , VAL B:278 , PRO B:279 , THR B:282 , ARG B:286 , HOH B:2032 , HOH B:2043	BINDING SITE FOR RESIDUE ACO B1334
4	AC4	SOFTWARE	THR A:180 , ARG A:183 , ILE A:236 , ALA A:237 , PHE A:238 , VAL A:240 , GLN A:245 , GLY A:246 , GLY A:248 , ILE A:249 , GLY A:250 , SER A:251 , ARG A:272 , ASN A:277 , PRO A:279 , MSE A:280 , THR A:282 , ILE A:283 , ARG A:286 , HOH A:2033 , HOH A:2034	BINDING SITE FOR RESIDUE ACO A1334
5	AC5	SOFTWARE	GLU A:52 , PRO A:53 , GLU B:13 , VAL B:30 , ALA B:33	BINDING SITE FOR RESIDUE PEG B1335
6	AC6	SOFTWARE	ILE B:174 , PHE B:176 , SER B:177 , LEU B:181	BINDING SITE FOR RESIDUE PEG B1336
7	AC7	SOFTWARE	ASP A:95 , ILE B:303 , ASP B:304	BINDING SITE FOR RESIDUE EDO B1337
8	AC8	SOFTWARE	ILE A:86 , GLU A:89 , LEU A:131 , ARG A:133 , THR A:134 , ALA A:135	BINDING SITE FOR RESIDUE PEG A1335

(no "SS Bond" information available for 4AVC)

Asymmetric Unit

No.	Residues
1	Gly A:288	-	Ala A:289
2	Pro A:306	-	Gly A:307
3	Gln B:22	-	Gly B:23
4	Asp B:73	-	Gly B:74

(no "SAP(SNP)/Variant" information available for 4AVC)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	PAT_MYCTU	20-122	2	A:20-122 B:20-122
2	CNMP_BINDING_2	PS00889	Cyclic nucleotide-binding domain signature 2.	PAT_MYCTU	87-104	2	A:87-104 B:87-104
3	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	PAT_MYCTU	156-318	2	A:156-318 B:156-318

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	PAT_MYCTU	20-122	1	A:20-122 -
2	CNMP_BINDING_2	PS00889	Cyclic nucleotide-binding domain signature 2.	PAT_MYCTU	87-104	1	A:87-104 -
3	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	PAT_MYCTU	156-318	1	A:156-318 -

Biological Unit 2 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	PAT_MYCTU	20-122	1	- B:20-122
2	CNMP_BINDING_2	PS00889	Cyclic nucleotide-binding domain signature 2.	PAT_MYCTU	87-104	1	- B:87-104
3	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	PAT_MYCTU	156-318	1	- B:156-318

(no "Exon" information available for 4AVC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:326
 aligned with PAT_MYCTU | O05581 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:326
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327      
            PAT_MYCTU     8 TGARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLMLRPVLPGDRERTVHGHIQFSGETLYRRFMSARVPSPALMHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARMLSDNVPMRTIMDRYGAVWQREDVGVITTMIDVPGPGELSLGREMVDQINRVARQVIEAVG 333
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh..hhhhhhhhhhhheeeee....eee.......eeeeeeeeeeeeeee.....eeeeee....eehhhhhhhh.....eeeeeeeeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeee.....eeeeee...hhhhhhhh.....hhhhhhhhhh.....hhhhhhhhhh.....eeeeeee....eeeeeeeee......eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh....eeee..eeeeeee..........hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CNMP_BINDING_3  PDB: A:20-122 UniProt: 20-122                                                          ---------------------------------GNAT  PDB: A:156-318 UniProt: 156-318                                                                                                                              --------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------CNMP_BINDING_2    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avc A   8 TGARVEDLAGmDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGmIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATmVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLmLRPVLPGDRERTVHGHIQFSGETLYRRFmSARVPSPALmHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARmLSDNVPmRTImDRYGAVWQREDVGVITTmIDVPGPGELSLGREmVDQINRVARQVIEAVG 333
                                    17|       27        37        47        57        67        77       |87        97       107       117   |   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267     | 277  |   |287       297    |  307       317       327      
                                     18-MSE                                                             85-MSE                             121-MSE                             157-MSE                      186-MSE   196-MSE                                                                      273-MSE  |   |               302-MSE        317-MSE            
                                                                                                                                                                                                                                                                                                          280-MSE                                                 
                                                                                                                                                                                                                                                                                                              284-MSE

Chain B from PDB  Type:PROTEIN  Length:326
 aligned with PAT_MYCTU | O05581 from UniProtKB/Swiss-Prot  Length:333

    Alignment length:326
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327      
            PAT_MYCTU     8 TGARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLMLRPVLPGDRERTVHGHIQFSGETLYRRFMSARVPSPALMHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARMLSDNVPMRTIMDRYGAVWQREDVGVITTMIDVPGPGELSLGREMVDQINRVARQVIEAVG 333
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh........hhhhhhhhhhhheeeee....eee........eeeeee..eeeeee.....eeeeee....ee.hhhhhhh.....eeee...eeeeeehhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeee.....eeeeee...hhhhhhhhh.....hhhhhhhhh.....hhhhhhhhhh.....eeeeeee....eeeeeeeee......eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh....eeee..eeeeeee.........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------CNMP_BINDING_3  PDB: B:20-122 UniProt: 20-122                                                          ---------------------------------GNAT  PDB: B:156-318 UniProt: 156-318                                                                                                                              --------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------CNMP_BINDING_2    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4avc B   8 TGARVEDLAGmDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGmIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATmVHIPGVGERLLRTARQRLAAFVSPIPVRLADGTQLmLRPVLPGDRERTVHGHIQFSGETLYRRFmSARVPSPALmHYLSEVDYVDHFVWVVTDGSDPVADARFVRDETDPTVAEIAFTVADAYQGRGIGSFLIGALSVAARVDGVERFAARmLSDNVPmRTImDRYGAVWQREDVGVITTmIDVPGPGELSLGREmVDQINRVARQVIEAVG 333
                                    17|       27        37        47        57        67        77       |87        97       107       117   |   127       137       147       157       167       177       187       197       207       217       227       237       247       257       267     | 277  |   |287       297    |  307       317       327      
                                     18-MSE                                                             85-MSE                             121-MSE                             157-MSE                      186-MSE   196-MSE                                                                      273-MSE  |   |               302-MSE        317-MSE            
                                                                                                                                                                                                                                                                                                          280-MSE                                                 
                                                                                                                                                                                                                                                                                                              284-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AVC)

(no "CATH Domain" information available for 4AVC)

(no "Pfam Domain" information available for 4AVC)

Asymmetric Unit(hide GO term definitions)

Chain A,B (PAT_MYCTU | O05581)


GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
GO:0016407	acetyltransferase activity	Catalysis of the transfer of an acetyl group to an acceptor molecule.
GO:0030552	cAMP binding	Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).

Asymmetric Unit
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	Cis Peptide Bonds
		Asp B:73 - Gly B:74	[ RasMol ]
		Gln B:22 - Gly B:23	[ RasMol ]
		Gly A:288 - Ala A:289	[ RasMol ]
		Pro A:306 - Gly A:307	[ RasMol ]

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	4avc
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	PAT_MYCTU \| O05581	:	4ava 4avb

4ava	CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 FROM MYCOBACTERIUM TUBERCULOSIS
4avb	CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 IN COMPLEX WITH ACETYL COA AND CAMP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 30)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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