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(-) Description

Title :  DISCOVERY OF NVP-CGM097 - A HIGHLY POTENT AND SELECTIVE MDM2 INHIBITOR UNDERGOING PHASE 1 CLINICAL TRIALS IN P53WT TUMORS: HDM2 (MDM2) COMPLEXED WITH NVP-CGM097
 
Authors :  J. Kallen
Date :  21 May 15  (Deposition) - 29 Jul 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Ppi With P53, Inhibitor Complex, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Holzer, K. Masuya, P. Furet, J. Kallen, T. Valat-Stachyra, S. Ferretti, J. Berghausen, M. Bouisset-Leonard, N. Buschmann, C. Pissot-Soldermann, C. Rynn, S. Ruetz, S. Stutz, P. Chene, S. Jeay, F. Gessier
Discovery Of A Dihydroisoquinolinone Derivative (Nvp-Cgm097): A Highly Potent And Selective Mdm2 Inhibitor Undergoing Phase 1 Clinical Trials In P53Wt Tumors.
J. Med. Chem. V. 58 6348 2015
PubMed-ID: 26181851  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00810

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE MDM2
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN, P53-BINDING DOMAIN, UNP RESIDUES 17-111
    Gene: MDM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,P53-BINDING PROTEIN MDM2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
14T41Ligand/Ion(S)-1-(4-CHLOROPHENYL)-7-ISOPROPOXY-6-METHOXY-2-(4-(METHYL(((1R,4S)-4-(4-METHYL-3-OXOPIPERAZIN-1-YL)CYCLOHEXYL)METHYL)AMINO)PHENYL)-1,2-DIHYDROISOQUINOLIN-3(4H)-ONE
2CL1Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:24 , LEU A:54 , PHE A:55 , MET A:62 , TYR A:67 , GLN A:72 , PHE A:86 , ARG A:97 , LYS A:98 , TYR A:100 , HOH A:302 , HOH A:311 , HOH A:323 , HOH A:337binding site for residue 4T4 A 201
2AC2SOFTWARELYS A:64 , ASP A:80 , LEU A:81binding site for residue CL A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZYF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZYF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZYF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZYF)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZYF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.eeeehhhhhhhhhh.......eehhhhhhhhhhhhhhhh........eee...hhhhhhhh..eee..hhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4zyf A  18 QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVV 110
                                    27        37        47        57        67        77        87        97       107
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZYF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZYF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZYF)

(-) Gene Ontology  (83, 83)

Asymmetric/Biological Unit(hide GO term definitions)

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  MDM2_HUMAN | Q00987
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MDM2_HUMAN | Q00987: 1rv1 1t4e 1t4f 1ycr 1z1m 2axi 2c6a 2c6b 2f1y 2fop 2gv2 2hdp 2lzg 2m86 2mps 2ruh 2vje 2vjf 3eqs 3g03 3iux 3iwy 3jzk 3jzr 3jzs 3lbk 3lbl 3lnj 3lnz 3mqs 3tj2 3tpx 3tu1 3v3b 3vbg 3vzv 3w69 4dij 4ere 4erf 4hbm 4hfz 4hg7 4jv7 4jv9 4jve 4jvr 4jwr 4mdn 4mdq 4oas 4oba 4occ 4ode 4odf 4ogn 4ogt 4ogv 4oq3 4qo4 4qoc 4ud7 4ue1 4umn 4wt2 4xxb 4zfi 4zgk 4zyc 4zyi 5afg 5c5a 5hmh 5hmi 5hmk 5j7f 5j7g 5lav 5law 5lay 5laz 5ln2 5mnj 5trf

(-) Related Entries Specified in the PDB File

4dij 4oq3 4zyc