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(-) Description

Title :  CO-CRYSTAL STRUCTURES OF PP5 IN COMPLEX WITH 5-METHYL-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
 
Authors :  D. Chattopadhyay, M. R. Swingle, E. A. Salter, A. Wierzbicki, R. E. Honk
Date :  20 May 15  (Deposition) - 27 Apr 16  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.23
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Phosphatase 5, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Chattopadhyay, M. R. Swingle, E. A. Salter, E. Wood, B. D'Arcy, C. Zivanov, K. Abney, A. Musiyenko, S. F. Rusin, A. Kettenbach, L. Yet, C. E. Schroeder, J. E. Golden, W. H. Dunham, A. C. Gingras, S. Banerjee, D. Forbes, A. Wierzbicki, R. E. Honkanen
Crystal Structures And Mutagenesis Of Ppp-Family Ser/Thr Protein Phosphatases Elucidate The Selectivity Of Cantharidin And Novel Norcantharidin-Based Inhibitors Of Pp5C.
Biochem. Pharmacol. V. 109 14 2016
PubMed-ID: 27002182  |  Reference-DOI: 10.1016/J.BCP.2016.03.011
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN PHOSPHATASE 5
    Chains: A
    EC Number: 3.1.3.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL2CE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 169-499
    Gene: PPP5C, PPP5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PP5,PROTEIN PHOSPHATASE T,PPT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
14TE1Ligand/Ion(1S,2R,3S,4R,5S)-5-METHYL-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
2MN2Ligand/IonMANGANESE (II) ION
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:271 , ASN A:303 , HIS A:352 , HIS A:427 , MN A:502 , 4TE A:503binding site for residue MN A 501
2AC2SOFTWAREASP A:242 , HIS A:244 , ASP A:271 , MN A:501 , 4TE A:503binding site for residue MN A 502
3AC3SOFTWAREASP A:242 , HIS A:244 , ASP A:271 , ARG A:275 , HIS A:304 , ARG A:400 , HIS A:427 , VAL A:429 , PHE A:446 , TYR A:451 , MN A:501 , MN A:502binding site for residue 4TE A 503
4AC4SOFTWAREASN A:308 , PRO A:376 , ASP A:377 , HOH A:651 , HOH A:711binding site for residue MPD A 504
5AC5SOFTWARELYS A:192 , GLU A:255 , HOH A:670binding site for residue MRD A 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZX2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZX2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZX2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZX2)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZX2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh...............hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee......eeeee.....hhhhhhhhhhhhh.......eeee........hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...eee...........hhhhhhh..........hhhhhhhhhee.....eee......eeehhhhhhhhhhhh...eeee........eeeehhh.eeee....hhhhh....eeeeeee..eeeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zx2 A 167 GASMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYAN 491
                                   176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZX2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZX2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZX2)

(-) Gene Ontology  (44, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  4zx2
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  PPP5_HUMAN | P53041
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  3.1.3.16
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPP5_HUMAN | P53041: 1a17 1s95 1wao 2bug 3h60 3h61 3h62 3h63 3h64 3h66 3h67 3h68 3h69 4zvz 5hpe

(-) Related Entries Specified in the PDB File

1s95 SAME PROTEIN WITHOUT THE INHIBITOR
4zvz