4ZVZ - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   CO-CRYSTAL STRUCTURES OF PP5 IN COMPLEX WITH 5-METHYL-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID

Authors :   D. Chattopadhyay, M. R. Swingle, E. A. Salter, A. Wierzbicki, R. E. Honk

Date :   19 May 15 (Deposition) - 27 Apr 16 (Release) - 08 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Protein Phosphatase 5, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Chattopadhyay, M. R. Swingle, E. A. Salter, E. Wood, B. D'Arcy, C. Zivanov, K. Abney, A. Musiyenko, S. F. Rusin, A. Kettenbach, L. Yet, C. E. Schroeder, J. E. Golden, W. H. Dunham, A. C. Gingras, S. Banerjee, D. Forbes, A. Wierzbicki, R. E. Honkanen
Crystal Structures And Mutagenesis Of Ppp-Family Ser/Thr Protein Phosphatases Elucidate The Selectivity Of Cantharidin And Novel Norcantharidin-Based Inhibitors Of Pp5C.
Biochem. Pharmacol. V. 109 14 2016
PubMed-ID: 27002182 | Reference-DOI: 10.1016/J.BCP.2016.03.011
(for further references see the PDB file header)

Molecule 1 - SERINE/THREONINE-PROTEIN PHOSPHATASE 5
	Chains	:	A, B, C, D
	EC Number	:	3.1.3.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMAL2CE
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 169-499
	Gene	:	PPP5C, PPP5
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PP5,PROTEIN PHOSPHATASE T,PPT

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 15)

No.	Name	Count	Type	Full Name
1	4TF	4	Ligand/Ion	(1R,2S,3R,4S,5S)-5-(PROPOXYMETHYL)-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
2	MN	8	Ligand/Ion	MANGANESE (II) ION
3	NA	1	Ligand/Ion	SODIUM ION
4	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	4TF	1	Ligand/Ion	(1R,2S,3R,4S,5S)-5-(PROPOXYMETHYL)-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NA	-1	Ligand/Ion	SODIUM ION
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	4TF	1	Ligand/Ion	(1R,2S,3R,4S,5S)-5-(PROPOXYMETHYL)-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NA	-1	Ligand/Ion	SODIUM ION
4	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	4TF	1	Ligand/Ion	(1R,2S,3R,4S,5S)-5-(PROPOXYMETHYL)-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NA	-1	Ligand/Ion	SODIUM ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	4TF	1	Ligand/Ion	(1R,2S,3R,4S,5S)-5-(PROPOXYMETHYL)-7-OXABICYCLO[2.2.1]HEPTANE-2,3-DICARBOXYLIC ACID
2	MN	-1	Ligand/Ion	MANGANESE (II) ION
3	NA	-1	Ligand/Ion	SODIUM ION
4	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:242 , HIS A:244 , ASP A:271 , MN A:502 , 4TF A:503	binding site for residue MN A 501
02	AC2	SOFTWARE	ASP A:271 , ASN A:303 , HIS A:352 , HIS A:427 , MN A:501 , 4TF A:503	binding site for residue MN A 502
03	AC3	SOFTWARE	ASP A:242 , HIS A:244 , ASP A:271 , ARG A:275 , ASN A:303 , HIS A:304 , ARG A:400 , HIS A:427 , GLU A:428 , VAL A:429 , PHE A:446 , TYR A:451 , MN A:501 , MN A:502 , GLN C:454	binding site for residue 4TF A 503
04	AC4	SOFTWARE	ASP B:242 , HIS B:244 , ASP B:271 , MN B:502 , 4TF B:503	binding site for residue MN B 501
05	AC5	SOFTWARE	ASP B:271 , ASN B:303 , HIS B:352 , HIS B:427 , MN B:501 , 4TF B:503	binding site for residue MN B 502
06	AC6	SOFTWARE	ASP B:242 , HIS B:244 , ASP B:271 , ARG B:275 , ASN B:303 , HIS B:304 , HIS B:352 , ARG B:400 , HIS B:427 , GLU B:428 , VAL B:429 , PHE B:446 , TYR B:451 , MN B:501 , MN B:502 , GLN D:454	binding site for residue 4TF B 503
07	AC7	SOFTWARE	ASP C:242 , HIS C:244 , ASP C:271 , MN C:502 , 4TF C:503	binding site for residue MN C 501
08	AC8	SOFTWARE	ASP C:271 , ASN C:303 , HIS C:352 , HIS C:427 , MN C:501 , 4TF C:503	binding site for residue MN C 502
09	AC9	SOFTWARE	ASP C:242 , HIS C:244 , ASP C:271 , ARG C:275 , ASN C:303 , HIS C:304 , ARG C:400 , HIS C:427 , GLU C:428 , VAL C:429 , PHE C:446 , TYR C:451 , MN C:501 , MN C:502	binding site for residue 4TF C 503
10	AD1	SOFTWARE	ASN C:308 , HIS C:463 , HIS C:474	binding site for residue NA C 504
11	AD2	SOFTWARE	LYS C:236 , ASP C:307 , GLU C:329 , SER C:332 , GLU C:333 , GLU C:336	binding site for residue PEG C 505
12	AD3	SOFTWARE	ASP D:242 , HIS D:244 , ASP D:271 , MN D:502 , 4TF D:503	binding site for residue MN D 501
13	AD4	SOFTWARE	ASP D:271 , ASN D:303 , HIS D:352 , HIS D:427 , MN D:501 , 4TF D:503	binding site for residue MN D 502
14	AD5	SOFTWARE	GLN B:454 , ASP D:242 , HIS D:244 , ASP D:271 , ARG D:275 , ASN D:303 , HIS D:304 , ARG D:400 , HIS D:427 , GLU D:428 , VAL D:429 , PHE D:446 , TYR D:451 , MN D:501 , MN D:502	binding site for residue 4TF D 503
15	AD6	SOFTWARE	PHE D:254 , GLU D:255	binding site for residue PEG D 504

(no "SS Bond" information available for 4ZVZ)

(no "Cis Peptide Bond" information available for 4ZVZ)

(no "SAP(SNP)/Variant" information available for 4ZVZ)

(no "PROSITE Motif" information available for 4ZVZ)

(no "Exon" information available for 4ZVZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee.......eeee.....hhhhhhhhhhhhh.......eeee........hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...eeee..........hhhhhhh..........hhhhhhhhhee.....eee......eeehhhhhhhhhhhh...eeee........eeee....eeee....hhhhh....eeeeee.......eeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zvz A 176 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPM 487
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485

Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee......eeeee.....hhhhhhhhhhhhh.......eeee........hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...eee...........hhhhhhh..........hhhhhhhhhee.....eee......eeehhhhhhhhhhhh...eeee........eeeehhh.eeee....hhhhh....eeeeeee..eeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zvz B 175 EYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYA 490
                                   184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484

Chain C from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee.......eeee.....hhhhhhhhhhhhh.......eeee........hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...eee...........hhhhhhh..........hhhhhhhhhee.....eee......eeehhhhhhhhhhhh...eeee........eeee....eeee....hhhhh....eeeeee...eeeee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zvz C 179 PKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLLRPQFHQFTAVPHPNVKPMAYAN 491
                                   188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458     ||472       482         
                                                                                                                                                                                                                                                                                                                       464|                      
                                                                                                                                                                                                                                                                                                                        469

Chain D from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee......eeeee.....hhhhhhhhhhhhh.......eeee........hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...eeee..........hhhhhhhh.........hhhhhhhhhee.....eee......eeehhhhhhhhhhhh...eeee........eeee....eeee....hhhhh....eeeeeee..eeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zvz D 178 GPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAY 489
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487

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(no "SCOP Domain" information available for 4ZVZ)

(no "CATH Domain" information available for 4ZVZ)

(no "Pfam Domain" information available for 4ZVZ)

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	4zvz
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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (15, 15)

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