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(-) Description

Title :  METHYLSULFANYL-CONTAINING INHIBITOR BOUND IN THE ACTIVE SITE OF MYCOBACTERIUM TUBERCULOSIS ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (ANPRT; TRPD)
 
Authors :  G. L. Evans, E. N. Baker, J. S. Lott, Tb Structural Genomics Consorti (Tbsgc)
Date :  06 May 15  (Deposition) - 11 May 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Inhibitor, Complex, Lobenzarit-Like Analogue, Tb Structural Genomics Consortium, Tbsgc, Phosphoribosyltransferase, Magnesium Binding, Phosphoribosylpyrophosphate, Prpp, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. L. Evans, E. N. Baker, J. S. Lott
Inhibitor Bound In The Active Site Of Mycobacterium Tuberculosis Anthranilate Phosphoribosyltransferase (Anprt; Trpd).
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET23A
    Expression System Strain: BL21(DE3) PGROESL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TRPD, MRA_2208
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS H37RA
    Organism Taxid: 419947
    Strain: ATCC 25177 / H37RA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric/Biological Unit (5, 10)
No.NameCountTypeFull Name
161L2Ligand/Ion4-METHYL-2-{[2-METHYL-6-(METHYLSULFANYL)PHENYL]AMINO}BENZOIC ACID
2IMD1Ligand/IonIMIDAZOLE
3MG4Ligand/IonMAGNESIUM ION
4PO41Ligand/IonPHOSPHATE ION
5PRP2Ligand/IonALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:251 , GLU A:252 , MG A:401 , PRP A:402 , HOH A:505 , HOH A:536 , HOH A:571 , HOH A:647binding site for residue MG A 400
02AC2SOFTWARESER A:119 , GLU A:252 , MG A:400 , PRP A:402 , HOH A:505 , HOH A:539binding site for residue MG A 401
03AC3SOFTWAREGLY A:107 , GLY A:109 , GLY A:110 , ASN A:117 , SER A:119 , THR A:120 , LYS A:135 , ASN A:138 , ARG A:139 , ALA A:140 , ALA A:141 , SER A:142 , SER A:143 , GLY A:146 , GLY A:147 , GLU A:252 , MG A:400 , MG A:401 , 61L A:403 , HOH A:505 , HOH A:507 , HOH A:532 , HOH A:536 , HOH A:576 , HOH A:609 , HOH A:624binding site for residue PRP A 402
04AC4SOFTWAREASN A:138 , ALA A:179 , PRO A:180 , HIS A:183 , TYR A:186 , ARG A:193 , PRP A:402 , HOH A:502 , HOH A:521 , HOH A:613binding site for residue 61L A 403
05AC5SOFTWAREARG A:238 , SER A:240 , ALA A:265 , ALA A:266 , GLY A:329 , LEU A:330binding site for residue PO4 A 404
06AC6SOFTWARESER B:119 , GLU B:252 , MG B:401 , PRP B:402 , HOH B:504 , HOH B:527binding site for residue MG B 400
07AC7SOFTWAREASP B:251 , GLU B:252 , MG B:400 , HOH B:504 , HOH B:552 , HOH B:577 , HOH B:602binding site for residue MG B 401
08AC8SOFTWAREVAL B:106 , GLY B:107 , GLY B:109 , GLY B:110 , ASP B:111 , ASN B:117 , SER B:119 , THR B:120 , LYS B:135 , ASN B:138 , ARG B:139 , ALA B:140 , ALA B:141 , SER B:142 , SER B:143 , GLY B:147 , GLU B:252 , MG B:400 , 61L B:403 , HOH B:503 , HOH B:504 , HOH B:552 , HOH B:579binding site for residue PRP B 402
09AC9SOFTWAREMET B:86 , ASN B:138 , ALA B:179 , HIS B:183 , ALA B:190 , GLY B:206 , PRP B:402 , HOH B:562binding site for residue 61L B 403
10AD1SOFTWAREARG A:237 , LEU B:305 , GLY B:306 , ILE B:351 , ASP B:352 , GLY B:354 , GLU B:357binding site for residue IMD B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZOJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZOJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZOJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZOJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZOJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee.........hhhhhhhhhhhhh...eeeee........hhhhhhhhh......hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee.....hhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zoj A  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324     ||338       348       358       368 
                                                                                                                                                                                                                                                                                                                                           330|                                  
                                                                                                                                                                                                                                                                                                                                            335                                  


Chain B from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee.........hhhhhhhhhhhhh...eeeee........hhhhhhhhh......hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee.....hhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh............hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zoj B  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324     ||338       348       358       368 
                                                                                                                                                                                                                                                                                                                                           330|                                  
                                                                                                                                                                                                                                                                                                                                            335
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZOJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZOJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZOJ)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_MYCTA | A5U4M0: 4x58 4x59 4x5a 4x5b 4x5c 4x5d 4x5e 4zof 4zok 4ztv 5bo2 5bo3

(-) Related Entries Specified in the PDB File

3qr9 ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE WITHOUT LIGAND
4giu ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH AN INHIBITOR WITH THE SAME SCAFFOLD
4zof ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE WITH RELATED INHIBITOR BOUND AT ACTIVE SITE
4zok ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE WITH RELATED INHIBITOR BOUND AT SUBSTRATE CAPTURE SITE