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(-) Description

Title :  BART-LIKE DOMAIN OF BARTL1/CCDC104 AA1-133 IN COMPLEX WITH ARL3FL BOUND TO GPPNHP IN P1 21 1
 
Authors :  M. Lokaj, C. Koerner, S. Koesling, A. Wittinghofer
Date :  27 Apr 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Arf-Like Gtpase, Gtp-Binding, Bart-Like Domain, Cilia, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lokaj, S. K. Kosling, C. Koerner, S. M. Lange, S. E. Van Beersum, J. Van Reeuwijk, R. Roepman, N. Horn, M. Ueffing, K. Boldt, A. Wittinghofer
The Interaction Of Ccdc104/Bartl1 With Arl3 And Implication For Ciliary Function.
Structure V. 23 2122 2015
PubMed-ID: 26455799  |  Reference-DOI: 10.1016/J.STR.2015.08.016

(-) Compounds

Molecule 1 - ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARL3
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 36
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T1 GATEWAY
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-133
    Gene: CFAP36, CCDC104
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: COILED-COIL DOMAIN-CONTAINING PROTEIN 104, BARTL1/CCDC104
 
Molecule 3 - CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 36
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T1 GATEWAY
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-133
    Gene: CFAP36, CCDC104
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: COILED-COIL DOMAIN-CONTAINING PROTEIN 104, BARTL1/CCDC104

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GNP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:26 , ASN A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ILE A:45 , THR A:48 , GLY A:70 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , SER A:159 , ALA A:160 , LEU A:161 , MG A:302 , HOH A:414 , HOH A:419 , HOH A:429 , HOH A:430 , HOH A:433binding site for residue GNP A 301
2AC2SOFTWARETHR A:31 , THR A:48 , GNP A:301 , HOH A:429 , HOH A:433binding site for residue MG A 302
3AC3SOFTWAREASP B:26 , ASN B:27 , ALA B:28 , GLY B:29 , LYS B:30 , THR B:31 , THR B:32 , ILE B:45 , PRO B:47 , THR B:48 , GLY B:70 , ASN B:126 , LYS B:127 , ASP B:129 , ALA B:160 , LEU B:161 , MG B:302 , HOH B:405 , HOH B:408 , HOH B:410 , HOH B:416binding site for residue GNP B 301
4AC4SOFTWARETHR B:31 , THR B:48 , GNP B:301 , HOH B:408binding site for residue MG B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZI3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZI3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZI3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZI3)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZI3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeeee.....hhhhhhhhhh............eeeeeeee..eeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zi3 A   3 LLSILRKLKSAPQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKKKL 183
                                    12 ||     23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183
                                      14|                                                                                                                                                                       
                                       16                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.eeeeeee....hhhhhhhhhh............eeeeeeee..eeeeeeee..hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhhh...eeeeee.................hhhhh....eeeee.......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zi3 B   3 LLSILRKLKEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 177
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
                                   11|                                                                                                                                                                
                                    17                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zi3 C   7 DEVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLESYLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRIIQ 129
                                    16        26        36        46        56        66        76        86        96       106       116       126   


Chain D from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zi3 D   3 AEEEDEVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLESYLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRIIQE 130
                                    12        22        32        42        52        62        72        82        92       102       112       122
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZI3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZI3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZI3)

(-) Gene Ontology  (38, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARL3_MOUSE | Q9WUL7: 1fzq 3bh6 3bh7 4goj 4zi2
        CFA36_MOUSE | Q8C6E0: 4zi2

(-) Related Entries Specified in the PDB File

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