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(-) Description

Title :  CRYSTAL STRUCTURE OF BRD9 BROMODOMAIN BOUND TO DMSO
 
Authors :  Y. Tang, S. Bellon, A. G. Cochran, F. Poy
Date :  23 Mar 15  (Deposition) - 16 Sep 15  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Complex, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. M. Flynn, O. W. Huang, F. Poy, M. Oppikofer, S. F. Bellon, Y. Tang, A. G. Cochran
A Subset Of Human Bromodomains Recognizes Butyryllysine And Crotonyllysine Histone Peptide Modifications.
Structure V. 23 1801 2015
PubMed-ID: 26365797  |  Reference-DOI: 10.1016/J.STR.2015.08.004

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 9
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPRSF
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentBROMODOMAIN (UNP RESIDUES 17-123)
    GeneBRD9, UNQ3040/PRO9856
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRHABDOMYOSARCOMA ANTIGEN MU-RMS-40.8, BRD9

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:44 , ASN A:100 , TYR A:106 , HOH A:308binding site for residue DMS A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YY4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YY4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YY4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YY4)

(-) Exons   (0, 0)

(no "Exon" information available for 4YY4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 4yy4 A  23 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSK 123
                                    32        42        52        62        72        82        92       102       112       122 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YY4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YY4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YY4)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  4yy4
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  BRD9_HUMAN | Q9H8M2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD9_HUMAN | Q9H8M23hme 4nqn 4uit 4uiu 4uiv 4uiw 4xy8 4yy6 4yyd 4yyg 4yyh 4yyi 4yyj 4yyk 4z6h 4z6i 5e9v 5eu1 5f1h 5f1l 5f25 5f2p 5i40 5i7x 5i7y 5igm 5ign 5ji8

(-) Related Entries Specified in the PDB File

4yy6 4yyd 4yyg 4yyh 4yyi 4yyj 4yyk 4yym 4yyn