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(-) Description

Title :  CRYSTAL STRUCTURES OF MPGES-1 INHIBITOR COMPLEXES
 
Authors :  J. G. Luz, S. Antonysamy, S. L. Kuklish, M. J. Fisher
Date :  04 Mar 15  (Deposition) - 10 Jun 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Inflammation, Prostaglandin, Isomerase-Isomerase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Luz, S. Antonysamy, S. L. Kuklish, B. Condon, M. R. Lee, D. Allison X. P. Yu, S. Chandrasekhar, R. Backer, A. Zhang, M. Russell, S. S. Chang A. Harvey, A. V. Sloan, M. J. Fisher
Crystal Structures Of Mpges-1 Inhibitor Complexes Form A Basis For The Rational Design Of Potent Analgesic And Anti-Inflammatory Therapeutics.
J. Med. Chem. V. 58 4727 2015
PubMed-ID: 25961169  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00330

(-) Compounds

Molecule 1 - PROSTAGLANDIN E SYNTHASE
    Chains: A
    EC Number: 5.3.99.3
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: RESIDUES 5-152
    Gene: PTGES, MGST1L1, MPGES1, PGES, PIG12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MICROSOMAL GLUTATHIONE S-TRANSFERASE 1-LIKE 1,MGST1-L1, MICROSOMAL PROSTAGLANDIN E SYNTHASE 1,MPGES-1,P53-INDUCED GENE 12 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 7)

Asymmetric Unit (6, 7)
No.NameCountTypeFull Name
14DZ1Ligand/Ion2-(9-CHLORO-1H-PHENANTHRO[9,10-D]IMIDAZOL-2-YL)BENZENE-1,3-DICARBONITRILE
2BOG2Ligand/IonB-OCTYLGLUCOSIDE
3CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
4GSH1Ligand/IonGLUTATHIONE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (6, 21)
No.NameCountTypeFull Name
14DZ3Ligand/Ion2-(9-CHLORO-1H-PHENANTHRO[9,10-D]IMIDAZOL-2-YL)BENZENE-1,3-DICARBONITRILE
2BOG6Ligand/IonB-OCTYLGLUCOSIDE
3CSO3Mod. Amino AcidS-HYDROXYCYSTEINE
4GSH3Ligand/IonGLUTATHIONE
5PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
6PG43Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:39 , PHE A:44 , ASP A:49 , ARG A:52 , HIS A:53 , ALA A:123 , PRO A:124 , SER A:127 , THR A:131 , HOH A:338 , HOH A:419binding site for residue 4DZ A 201
2AC2SOFTWAREALA A:31 , THR A:34 , ARG A:38 , LEU A:69 , ARG A:70 , ARG A:73 , ASN A:74 , GLU A:77 , HIS A:113 , TYR A:117 , ARG A:126 , SER A:127 , TYR A:130 , HOH A:303 , HOH A:310 , HOH A:316 , HOH A:330 , HOH A:366 , HOH A:367binding site for residue GSH A 202
3AC3SOFTWAREGLY A:54 , GLN A:57 , SER A:139 , LEU A:142 , GLN A:143 , TRP A:146 , PG4 A:205 , HOH A:312 , HOH A:380binding site for residue BOG A 203
4AC4SOFTWARELEU A:118 , GLY A:119 , LYS A:120 , HOH A:399binding site for residue BOG A 204
5AC5SOFTWAREBOG A:203 , HOH A:380binding site for residue PG4 A 205
6AC6SOFTWARELEU A:118binding site for residue PEG A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YL0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:123 -Pro A:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YL0)

(-) Exons   (0, 0)

(no "Exon" information available for 4YL0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yl0 A   5 SLVMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYcRSDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGKLRAPIRSVTYTLAQLPCASMALQILWEAARHL 152
                                    14        24        34        44        54    |   64        74        84        94       104       114       124       134       144        
                                                                                 59-CSO
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YL0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YL0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YL0)

(-) Gene Ontology  (25, 25)

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  Cis Peptide Bonds
    Ala A:123 - Pro A:124   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTGES_HUMAN | O14684: 3dww 4al0 4al1 4bpm 4wab 4yk5 4yl1 4yl3 5bqg 5bqh 5bqi 5k0i 5t36 5t37 5tl9

(-) Related Entries Specified in the PDB File

4yk5 4yl1 4yl3