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(-) Description

Title :  CRYSTAL STRUCTURE OF MPGES1 SOLVED BY NATIVE-SAD PHASING
 
Authors :  T. Weinert, D. Li, N. Howe, M. Caffrey, M. Wang
Date :  29 Aug 14  (Deposition) - 10 Dec 14  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Native-Sad, Isomerase, Cancer, Drug Target, In Meso Crystallization, Inflammation, Inhibitor, Leukotriene C4 Synthase, Lipid Metabolism, Membrane-Associated Proteins In Eicosanoid And Glutathione Metabolism, Mapag, Membrane Protein, Mpges1, Pain, Microcrystal, Anomalous Dispersion, Sulfur-Sad, S-Sad, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Weinert, V. Olieric, S. Waltersperger, E. Panepucci, L. Chen, H. Zhang, D. Zhou, J. Rose, A. Ebihara, S. Kuramitsu, D. Li, N. Howe, G. Schnapp, A. Pautsch, K. Bargsten, A. E. Prota, P. Surana, J. Kottur, D. T. Nair, F. Basilico, V. Cecatiello, S. Pasqualato, A. Boland, O. Weichenrieder, B. C. Wang, M. O. Steinmetz, M. Caffrey, M. Wang
Fast Native-Sad Phasing For Routine Macromolecular Structur Determination.
Nat. Methods V. 12 131 2015
PubMed-ID: 25506719  |  Reference-DOI: 10.1038/NMETH.3211

(-) Compounds

Molecule 1 - PROSTAGLANDIN E SYNTHASE,LEUKOTRIENE C4 SYNTHASE
    ChainsA
    EC Number5.3.99.3
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFB1-6H-MPGES (10-152)-F-LTC4S
    Expression System Taxid7108
    Expression System Vector TypePFASTBAC1
    GenePTGES, MGST1L1, MPGES1, PGES, PIG12, LTC4S
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMICROSOMAL GLUTATHIONE S-TRANSFERASE 1-LIKE 1,MGST1-L1, MICROSOMAL PROSTAGLANDIN E SYNTHASE 1,MPGES-1,P53-INDUCED GENE 12 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1GSH1Ligand/IonGLUTATHIONE
2LVJ1Ligand/Ion2-[[2,6-BIS(CHLORANYL)-3-[(2,2-DIMETHYLPROPANOYLAMINO)METHYL]PHENYL]AMINO]-1-METHYL-6-(2-METHYL-2-OXIDANYL-PROPOXY)-N-[2,2,2-TRIS(FLUORANYL)ETHYL]BENZIMIDAZOLE-5-CARBOXAMIDE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GSH3Ligand/IonGLUTATHIONE
2LVJ3Ligand/Ion2-[[2,6-BIS(CHLORANYL)-3-[(2,2-DIMETHYLPROPANOYLAMINO)METHYL]PHENYL]AMINO]-1-METHYL-6-(2-METHYL-2-OXIDANYL-PROPOXY)-N-[2,2,2-TRIS(FLUORANYL)ETHYL]BENZIMIDAZOLE-5-CARBOXAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:31 , THR A:34 , ARG A:38 , LEU A:69 , ARG A:70 , ARG A:73 , ASN A:74 , GLU A:77 , HIS A:113 , TYR A:117 , ARG A:126 , SER A:127 , TYR A:130 , LVJ A:202 , HOH A:304binding site for residue GSH A 201
2AC2SOFTWAREGLY A:35 , ASP A:49 , ARG A:52 , HIS A:53 , ALA A:123 , PRO A:124 , SER A:127 , VAL A:128 , THR A:131 , LEU A:132 , GSH A:201binding site for residue LVJ A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WAB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:123 -Pro A:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WAB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WAB)

(-) Exons   (0, 0)

(no "Exon" information available for 4WAB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wab A  10 SPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGKLRAPIRSVTYTLAQLPCASMALQILWEAARHFLPAALRAALLGRLRTLRP 170
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169 

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WAB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WAB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WAB)

(-) Gene Ontology  (48, 56)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LTC4S_HUMAN | Q168732pno 2uuh 2uui 3b29 3hkk 3leo 3pcv 4bpm 4j7t 4j7y 4jc7 4jcz 4jrz 5hv9
        PTGES_HUMAN | O146843dww 4al0 4al1 4bpm 4yk5 4yl0 4yl1 4yl3 5bqg 5bqh 5bqi 5k0i 5t36 5t37 5tl9

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WAB)