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(-) Description

Title :  CRYSTAL STRUCTURES OF MPGES-1 INHIBITOR COMPLEXES
 
Authors :  J. G. Luz, S. Antonysamy, S. L. Kuklish, M. J. Fisher
Date :  04 Mar 15  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Inflammation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. G. Luz, S. Antonysamy, S. L. Kuklish, B. Condon, M. R. Lee, D. Allison X. P. Yu, S. Chandrasekhar, R. Backer, A. Zhang, M. Russell, S. S. Chang A. Harvey, A. V. Sloan, M. J. Fisher
Crystal Structures Of Mpges-1 Inhibitor Complexes Form A Basis For The Rational Design Of Potent Analgesic And Anti-Inflammatory Therapeutics.
J. Med. Chem. V. 58 4727 2015
PubMed-ID: 25961169  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00330

(-) Compounds

Molecule 1 - PROSTAGLANDIN E SYNTHASE
    Chains: A
    EC Number: 5.3.99.3
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: PTGES, MGST1L1, MPGES1, PGES, PIG12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MICROSOMAL GLUTATHIONE S-TRANSFERASE 1-LIKE 1,MGST1-L1, MICROSOMAL PROSTAGLANDIN E SYNTHASE 1,MPGES-1,P53-INDUCED GENE 12 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 6)

Asymmetric Unit (6, 6)
No.NameCountTypeFull Name
14DV1Ligand/Ion3-[1-(4-CHLOROBENZYL)-5-(2-FLUORO-2'-METHYLBIPHENYL-4-YL)-3-METHYL-1H-INDOL-2-YL]-2,2-DIMETHYLPROPANOIC ACID
2BOG1Ligand/IonB-OCTYLGLUCOSIDE
3GSH1Ligand/IonGLUTATHIONE
4JZR1Ligand/IonHEXYL BETA-D-GLUCOPYRANOSIDE
5PG01Ligand/Ion2-(2-METHOXYETHOXY)ETHANOL
6PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (6, 18)
No.NameCountTypeFull Name
14DV3Ligand/Ion3-[1-(4-CHLOROBENZYL)-5-(2-FLUORO-2'-METHYLBIPHENYL-4-YL)-3-METHYL-1H-INDOL-2-YL]-2,2-DIMETHYLPROPANOIC ACID
2BOG3Ligand/IonB-OCTYLGLUCOSIDE
3GSH3Ligand/IonGLUTATHIONE
4JZR3Ligand/IonHEXYL BETA-D-GLUCOPYRANOSIDE
5PG03Ligand/Ion2-(2-METHOXYETHOXY)ETHANOL
6PG43Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:32 , GLY A:35 , LEU A:39 , PHE A:44 , ARG A:52 , PRO A:124 , TYR A:130 , THR A:131 , GLN A:134 , ALA A:138 , HOH A:308 , HOH A:313 , HOH A:335binding site for residue 4DV A 201
2AC2SOFTWAREILE A:33 , ARG A:67binding site for residue PG0 A 202
3AC3SOFTWAREALA A:31 , THR A:34 , ARG A:38 , LEU A:69 , ARG A:70 , ARG A:73 , ASN A:74 , GLU A:77 , HIS A:113 , TYR A:117 , ARG A:126 , SER A:127 , TYR A:130 , HOH A:301 , HOH A:313 , HOH A:321 , HOH A:323 , HOH A:349 , HOH A:367binding site for residue GSH A 203
4AC4SOFTWAREGLY A:54 , GLN A:57 , SER A:139 , GLN A:143 , TRP A:146 , PG4 A:206 , HOH A:310 , HOH A:311 , HOH A:337 , HOH A:384binding site for residue JZR A 204
5AC5SOFTWARELEU A:118 , GLY A:119 , LYS A:120binding site for residue BOG A 205
6AC6SOFTWAREJZR A:204 , HOH A:384 , HOH A:422binding site for residue PG4 A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YK5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:123 -Pro A:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YK5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YK5)

(-) Exons   (0, 0)

(no "Exon" information available for 4YK5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yk5 A   7 VMSSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGKLRAPIRSVTYTLAQLPCASMALQILWEAARHL 152
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YK5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YK5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YK5)

(-) Gene Ontology  (25, 25)

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    Ala A:123 - Pro A:124   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTGES_HUMAN | O14684: 3dww 4al0 4al1 4bpm 4wab 4yl0 4yl1 4yl3 5bqg 5bqh 5bqi 5k0i 5t36 5t37 5tl9

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4YK5)