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(-) Description

Title :  YEAST PRP3 (296-469) IN COMPLEX WITH FRAGMENT OF U4/U6 DI-SNRNA
 
Authors :  S. Liu, M. C. Wahl
Date :  27 Feb 15  (Deposition) - 22 Jul 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,E  (1x)
Biol. Unit 2:  B,D,F  (1x)
Keywords :  Splicing, U4/U6 Di-Snrnp, Rna-Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liu, S. Mozaffari-Jovin, J. Wollenhaupt, K. F. Santos, M. Theuser, S. Dunin-Horkawicz, P. Fabrizio, J. M. Bujnicki, R. Luhrmann, M. C. Wahl
A Composite Double-/Single-Stranded Rna-Binding Region In Protein Prp3 Supports Tri-Snrnp Stability And Splicing.
Elife V. 4 07320 2015
PubMed-ID: 26161500  |  Reference-DOI: 10.7554/ELIFE.07320

(-) Compounds

Molecule 1 - U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PRP3, RNA3, YDR473C, D8035.16
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: PRE-MRNA-SPLICING FACTOR 3
 
Molecule 2 - U4 SNRNA FRAGMENT
    Chains: C, D
    Engineered: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synthetic: YES
 
Molecule 3 - U6 SNRNA FRAGMENT
    Chains: E, F
    Engineered: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A C E 
Biological Unit 2 (1x):  B D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4YHW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YHW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YHW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YHW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YHW)

(-) Exons   (0, 0)

(no "Exon" information available for 4YHW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhh..eeeeee......eeeeeeehhhhhhhhhhhhhhh......eee......eee......eeeeeeeee.......eee....hhhhhhhhhhhh.hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yhw A 335 TVYHCKVFQFKNLQNPKIRFKLKmNSKELSLKGLCLRIRDDGPGIIIVVGNEKSCKFYENLVmKRIKWNEDFELHTNTGDIKmDmHNNSISKTWEGYLQDCKFKGWFmKVCNDQDSLLRTLGQFDSEHFYSPV 467
                                   344       354   |   364       374       384       394  |    404       414  | |  424       434       444       454       464   
                                                 358-MSE                                397-MSE             417-MSE                  442-MSE                     
                                                                                                              419-MSE                                            


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhh..eeeeee......eeeeeeehhhhhhhhhhhhhhh......eee......eee......eeeeeeeee.......eee....hhhhhhhhhhhh.hhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yhw B 335 TVYHCKVFQFKNLQNPKIRFKLKmNSKELSLKGLCLRIRDDGPGIIIVVGNEKSCKFYENLVmKRIKWNEDFELHTNTGDIKmDmHNNSISKTWEGYLQDCKFKGWFmKVCNDQDSLLRTLGQFDSEHFYSPV 467
                                   344       354   |   364       374       384       394  |    404       414  | |  424       434       444       454       464   
                                                 358-MSE                                397-MSE             417-MSE                  442-MSE                     
                                                                                                              419-MSE                                            


Chain C from PDB  Type:RNA  Length:17
                                                 
                 4yhw C   1 AUCCUUAUGCACGGGAA  17
                                    10       


Chain D from PDB  Type:RNA  Length:17
                                                 
                 4yhw D   1 AUCCUUAUGCACGGGAA  17
                                    10       


Chain E from PDB  Type:RNA  Length:27
                                                           
                 4yhw E  64 UUCCCCUGCAUAAGGAUGAACCGUUUU  90
                                    73        83       


Chain F from PDB  Type:RNA  Length:27
                                                           
                 4yhw F  64 UUCCCCUGCAUAAGGAUGAACCGUUUU  90
                                    73        83
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YHW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YHW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YHW)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRP3_YEAST | Q03338: 3jcm 4yhu 4yhv 5gan 5gap

(-) Related Entries Specified in the PDB File

4yhu 4yhv 4yhw