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(-) Description

Title :  YEAST PRP3 C-TERMINAL FRAGMENT 296-469
 
Authors :  S. Liu, M. C. Wahl
Date :  27 Feb 15  (Deposition) - 22 Jul 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Spliceosomal Protein, Duf1115, Ferredoxin-Like Fold, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liu, S. Mozaffari-Jovin, J. Wollenhaupt, K. F. Santos, M. Theuser, S. Dunin-Horkawicz, P. Fabrizio, J. M. Bujnicki, R. Luhrmann, M. C. Wahl
A Composite Double-/Single-Stranded Rna-Binding Region In Protein Prp3 Supports Tri-Snrnp Stability And Splicing.
Elife V. 4 07320 2015
PubMed-ID: 26161500  |  Reference-DOI: 10.7554/ELIFE.07320
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP3
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL FRAGMENT, UNP RESIDUES 296-469
    Gene: PRP3, RNA3, YDR473C, D8035.16
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: PRE-MRNA-SPLICING FACTOR 3, PRP3

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1YT34Ligand/IonYTTRIUM (III) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1YT32Ligand/IonYTTRIUM (III) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1YT31Ligand/IonYTTRIUM (III) ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1YT31Ligand/IonYTTRIUM (III) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:405 , ASP A:418 , HOH A:603 , HOH A:606 , GLU B:407 , HOH B:601binding site for residue YT3 A 501
2AC2SOFTWAREGLU A:386binding site for residue YT3 A 502
3AC3SOFTWAREASP B:405 , ASP B:418binding site for residue YT3 B 501
4AC4SOFTWAREASP C:405binding site for residue YT3 C 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YHU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YHU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YHU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YHU)

(-) Exons   (0, 0)

(no "Exon" information available for 4YHU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh.eeeeeee.....eeeeeeehhhhhhhhhhhhhh.......eeee....eeee........eeeeeee.......eeeeee.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yhu A 335 TVYHCKVFQFKNLQNPKIRFKLKMNSKELSLKGLCLRIRDDGPGIIIVVGNEKSCKFYENLVMKRIKWNEDFELHTNTGDIKMDMHNNSISKTWEGYLQDCKFKGWFMKVCNDQDSLLRTLGQFDSEHFYSPV 467
                                   344       354       364       374       384       394       404       414       424       434       444       454       464   


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhh.eeeeeee.....eeeeeeehhhhhhhhhhhhhhh......eeee....eeee......eeeeeeeee......eeeeeee.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yhu B 335 TVYHCKVFQFKNLQNPKIRFKLKMNSKELSLKGLCLRIRDDGPGIIIVVGNEKSCKFYENLVMKRIKWNEDFELHTNTGDIKMDMHNNSISKTWEGYLQDCKFKGWFMKVCNDQDSLLRTLGQFDSEHFYSP 466
                                   344       354       364       374       384       394       404       414       424       434       444       454       464  


Chain C from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhh..eeeeeee.....eeeeeeehhhhhhhhhhhhhhh.........eeeeeeeee......eeeeeee.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4yhu C 335 TVYHCKVFQFKNLQNPKIRFKLKMNSKELSLKGLCLRIRDDGPGIIIVVGNEKSCKFYENLVMKRIKWNEDFNSISKTWEGYLQDCKFKGWFMKVCNDQDSLLRTLGQFDSEHFYSP 466
                                   344       354       364       374       384       394       404 ||    429       439       449       459       
                                                                                                 406|                                            
                                                                                                  422
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YHU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YHU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YHU)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRP3_YEAST | Q03338: 3jcm 4yhv 4yhw 5gan 5gap

(-) Related Entries Specified in the PDB File

4yhu 4yhv 4yhw