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(-) Description

Title :  C-HELIX-OUT DASATINIB ANALOG CRYSTALLIZED WITH C-SRC KINASE
 
Authors :  F. E. Kwarcinski, K. B. Brandvold, T. K. Johnson, S. Phadke, J. L. Meaghe M. A. Seeliger, J. A. Stuckey, M. B. Soellner
Date :  18 Feb 15  (Deposition) - 02 Mar 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, C-Helix-Out, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. E. Kwarcinski, K. R. Brandvold, S. Phadke, O. M. Beleh, T. K. Johnson J. L. Meagher, M. A. Seeliger, J. A. Stuckey, M. B. Soellner
Conformation-Selective Analogues Of Dasatinib Reveal Insigh Into Kinase Inhibitor Binding And Selectivity.
Acs Chem. Biol. V. 11 1296 2016
PubMed-ID: 26895387  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B01018

(-) Compounds

Molecule 1 - PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 251-533
    Gene: SRC
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
14B71Ligand/Ion2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-N-(4-PHENOXYPHENYL)-1,3-THIAZOLE-5-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:273 , VAL A:281 , ALA A:293 , LYS A:295 , ILE A:336 , THR A:338 , GLU A:339 , TYR A:340 , MET A:341 , SER A:342 , GLY A:344 , LEU A:393 , ASP A:404 , PHE A:405binding site for residue 4B7 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YBK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:332 -Pro A:333

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YBK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YBK)

(-) Exons   (0, 0)

(no "Exon" information available for 4YBK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eeeeeeeee...eeeeeeee...eeeeeeee.....hhhhhhhhhhhhh.........eeeee....eeeeee....eehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee..........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ybk A 256 AKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   265       275       285       295       305       315       325       335       345       355       365       375       385       395       405    || 427       437       447       457       467       477       487       497       507       517       527      
                                                                                                                                                                                    410|                                                                                                              
                                                                                                                                                                                     423
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YBK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YBK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YBK)

(-) Gene Ontology  (99, 99)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ybk
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SRC_CHICK | P00523: 1f1w 1f2f 1nlo 1nlp 1p13 1prl 1prm 1rlp 1rlq 1srl 1srm 2hwo 2hwp 2oiq 2ptk 2qi8 2qlq 2qq7 3d7t 3d7u 3dqw 3dqx 3el7 3el8 3en4 3en5 3en6 3en7 3f3t 3f3u 3f3v 3f3w 3f6x 3fj5 3g5d 3g6g 3g6h 3geq 3lok 3oez 3of0 3qlf 3qlg 3svv 3tz7 3tz8 3tz9 3u4w 3u51 3uqf 3uqg 4agw 4dgg 4fic 4hvu 4hvv 4hvw 4jz3 4jz4 4le9 4lgg 4lgh 4mcv 4o2p 4oml 4omm 4omn 4omo 4omp 4omq 4qt7 4rtu 4rtv 4rtw 4rtx 4rty 4rtz 4u5j 4ybj 5bmm 5d10 5d11 5d12 5ec7 5eca 5i11 5j5s 5k9i 5oav 5ob0 5ob1 5ob2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4YBK)