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(-) Description

Title :  KINASE DOMAIN OF CSRC IN COMPLEX WITH RL236
 
Authors :  C. Becker, S. C. Mayer-Wrangowski, E. Julian, D. Rauh
Date :  03 Aug 15  (Deposition) - 02 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase Inhibitor, Drug Resistance, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Engel, A. Richters, M. Getlik, S. Tomassi, M. Keul, M. Termathe, J. Lategahn, C. Becker, S. Mayer-Wrangowski, C. Grutter, N. Uhlenbrock, J. Krull, N. Schaumann, S. Eppmann, P. Kibies, F. Hoffgaard, J. Heil, S. Menninger, S. Ortiz-Cuaran, J. M. Heuckmann V. Tinnefeld, R. P. Zahedi, M. L. Sos, C. Schultz-Fademrecht, R. K. Thomas, S. M. Kast, D. Rauh
Targeting Drug Resistance In Egfr With Covalent Inhibitors: A Structure-Based Design Approach.
J. Med. Chem. V. 58 6844 2015
PubMed-ID: 26275028  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01082

(-) Compounds

Molecule 1 - PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SRC
    Mutation: YES
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
15632Ligand/IonN-[4-({4-(4-METHYLPIPERAZIN-1-YL)-6-[(5-METHYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}OXY)PHENYL]PROP-2-ENAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
15631Ligand/IonN-[4-({4-(4-METHYLPIPERAZIN-1-YL)-6-[(5-METHYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}OXY)PHENYL]PROP-2-ENAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
15631Ligand/IonN-[4-({4-(4-METHYLPIPERAZIN-1-YL)-6-[(5-METHYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}OXY)PHENYL]PROP-2-ENAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:275 , ALA A:293 , GLU A:339 , TYR A:340 , MET A:341 , GLY A:344 , LEU A:393 , ASP A:404binding site for residue 563 A 601
2AC2SOFTWARELEU B:273 , VAL B:281 , GLU B:339 , TYR B:340 , MET B:341 , SER B:342 , GLY B:344 , LEU B:393binding site for residue 563 B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D10)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Glu A:305 -Ala A:306
2Glu A:332 -Pro A:333
3Glu B:332 -Pro B:333
4Gly B:406 -Leu B:407

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D10)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D10)

(-) Exons   (0, 0)

(no "Exon" information available for 5D10)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeee....eeeeee...eeeeeeee..........hhhhh........eeeee....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d10 A 258 DAWEIPRESLRLEVKLGQEVWMGTWNGTTRVAIKTLKPGTMSPEAAQVMKKLRHEKLVQLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   267       281       291       301    || 315       325       335       345       355       365       375       385       395       425       435       445       455       465       475       485       495       505       515       525        
                                           275|                       306|                                                                                          404|                                                                                                            
                                            280                        311                                                                                           425                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeee......eeeeee...eeeeeee..hhhhh........eeeee.....eeee......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhh.eee.hhh.eee.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d10 B 257 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLAQVMKKLRHEKLVQLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   266       276       286       296||     319       329       339       349       359       369       379       389       399       426       436       446       456       466       476       486       496       506       516       526       
                                                                  297|                                                                                             407|                                                                                                            
                                                                   311                                                                                              425
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D10)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D10)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D10)

(-) Gene Ontology  (99, 99)

Asymmetric Unit(hide GO term definitions)

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    Glu A:332 - Pro A:333   [ RasMol ]  
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    Gly B:406 - Leu B:407   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SRC_CHICK | P00523: 1f1w 1f2f 1nlo 1nlp 1p13 1prl 1prm 1rlp 1rlq 1srl 1srm 2hwo 2hwp 2oiq 2ptk 2qi8 2qlq 2qq7 3d7t 3d7u 3dqw 3dqx 3el7 3el8 3en4 3en5 3en6 3en7 3f3t 3f3u 3f3v 3f3w 3f6x 3fj5 3g5d 3g6g 3g6h 3geq 3lok 3oez 3of0 3qlf 3qlg 3svv 3tz7 3tz8 3tz9 3u4w 3u51 3uqf 3uqg 4agw 4dgg 4fic 4hvu 4hvv 4hvw 4jz3 4jz4 4le9 4lgg 4lgh 4mcv 4o2p 4oml 4omm 4omn 4omo 4omp 4omq 4qt7 4rtu 4rtv 4rtw 4rtx 4rty 4rtz 4u5j 4ybj 4ybk 5bmm 5d11 5d12 5ec7 5eca 5i11 5j5s 5k9i 5oav 5ob0 5ob1 5ob2

(-) Related Entries Specified in the PDB File

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