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(-) Description

Title :  KINASE DOMAIN OF CSRC IN COMPLEX WITH RL235
 
Authors :  C. Becker, C. Gruetter, J. Engel, D. Rauh
Date :  03 Aug 15  (Deposition) - 09 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase Inhibitor, Drug Resistance, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Engel, A. Richters, M. Getlik, S. Tomassi, M. Keul, M. Termathe, J. Lategahn, C. Becker, S. Mayer-Wrangowski, C. Grutter, N. Uhlenbrock, J. Krull, N. Schaumann, S. Eppmann, P. Kibies, F. Hoffgaard, J. Heil, S. Menninger, S. Ortiz-Cuaran, J. M. Heuckmann V. Tinnefeld, R. P. Zahedi, M. L. Sos, C. Schultz-Fademrecht, R. K. Thomas, S. M. Kast, D. Rauh
Targeting Drug Resistance In Egfr With Covalent Inhibitors: A Structure-Based Design Approach.
J. Med. Chem. V. 58 6844 2015
PubMed-ID: 26275028  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B01082

(-) Compounds

Molecule 1 - PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SRC
    Mutation: YES
    Organism Common: CHICKEN
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031
    Synonym: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
156G2Ligand/IonN-[3-({4-(4-METHYLPIPERAZIN-1-YL)-6-[(5-METHYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}OXY)PHENYL]PROP-2-ENAMIDE
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
156G1Ligand/IonN-[3-({4-(4-METHYLPIPERAZIN-1-YL)-6-[(5-METHYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}OXY)PHENYL]PROP-2-ENAMIDE
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
156G1Ligand/IonN-[3-({4-(4-METHYLPIPERAZIN-1-YL)-6-[(5-METHYL-1H-PYRAZOL-3-YL)AMINO]PYRIMIDIN-2-YL}OXY)PHENYL]PROP-2-ENAMIDE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:362binding site for residue GOL A 601
2AC2SOFTWARELEU A:273 , GLY A:274 , ALA A:293 , GLU A:339 , TYR A:340 , MET A:341 , SER A:342 , GLY A:344 , CYS A:345 , LEU A:393binding site for residue 56G A 602
3AC3SOFTWAREGLN B:362 , ARG B:438 , HOH B:724binding site for residue GOL B 601
4AC4SOFTWARELEU B:273 , GLY B:274 , ALA B:293 , GLU B:339 , TYR B:340 , MET B:341 , SER B:342 , GLY B:344 , LEU B:346 , LEU B:347 , ASP B:348 , PHE B:349 , ALA B:390 , ILE B:392 , LEU B:393 , HOH B:718 , HOH B:736binding site for Di-peptide 56G B 602 and CYS B 345

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D11)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:332 -Pro A:333
2Glu B:332 -Pro B:333

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D11)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D11)

(-) Exons   (0, 0)

(no "Exon" information available for 5D11)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeeeeee....eeeeeee...eeeeeee........hhhhhh........eeeee.....eeee.....eehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d11 A 258 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSEAQVMKKLRHEKLVQLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   267       277       287       297     ||313       323       333       343       353       363       373       383       393       403   ||  429       439       449       459       469       479       489       499       509       519       529    
                                                                       303|                                                                                              407|                                                                                                             
                                                                        310                                                                                               424                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeeee..eeeeeeee...eeeee....hhhhhhhh.........eeeee.....eeee.....eehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d11 B 257 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTSTEPQYQPGENL 533
                                   266       276       286       296||     315       325       335       345       355       365       375       385       395       405    || 428       438       448       458       468       478       488       498       508       518       528     
                                                                  297|                                                                                                    410|                                                                                                             
                                                                   307                                                                                                     424
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D11)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D11)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D11)

(-) Gene Ontology  (99, 99)

Asymmetric Unit(hide GO term definitions)

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  SRC_CHICK | P00523
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SRC_CHICK | P00523: 1f1w 1f2f 1nlo 1nlp 1p13 1prl 1prm 1rlp 1rlq 1srl 1srm 2hwo 2hwp 2oiq 2ptk 2qi8 2qlq 2qq7 3d7t 3d7u 3dqw 3dqx 3el7 3el8 3en4 3en5 3en6 3en7 3f3t 3f3u 3f3v 3f3w 3f6x 3fj5 3g5d 3g6g 3g6h 3geq 3lok 3oez 3of0 3qlf 3qlg 3svv 3tz7 3tz8 3tz9 3u4w 3u51 3uqf 3uqg 4agw 4dgg 4fic 4hvu 4hvv 4hvw 4jz3 4jz4 4le9 4lgg 4lgh 4mcv 4o2p 4oml 4omm 4omn 4omo 4omp 4omq 4qt7 4rtu 4rtv 4rtw 4rtx 4rty 4rtz 4u5j 4ybj 4ybk 5bmm 5d10 5d12 5ec7 5eca 5i11 5j5s 5k9i 5oav 5ob0 5ob1 5ob2

(-) Related Entries Specified in the PDB File

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