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(-) Description

Title :  M300V 3D POLYMERASE MUTANT OF EMCV
 
Authors :  N. Verdaguer, C. Ferrer-Orta, L. Vives-Adrian
Date :  09 Feb 15  (Deposition) - 01 Apr 15  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Rna Dependent Rna Polymerase Cardiovirus Inhibitor Resistance, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Van Der Linden, L. Vives-Adrian, B. Selisko, C. Ferrer-Orta, X. Liu, K. Lanke, R. Ulferts, A. M. De Palma, F. Tanchis, N. Goris, D. Lefebvre, K. De Clercq, P. Leyssen, C. Lacroix, G. Purstinger, B. Coutard, B. Canard, D. D. Boehr, J. J. Arnold, C. E. Cameron, N. Verdaguer, J. Neyts, F. J. Van Kuppeveld
The Rna Template Channel Of The Rna-Dependent Rna Polymeras As A Target For Development Of Antiviral Therapy Of Multipl Genera Within A Virus Family.
Plos Pathog. V. 11 04733 2015
PubMed-ID: 25799064  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004733

(-) Compounds

Molecule 1 - GENOME POLYPROTEIN
    Chains: A
    EC Number: 3.6.1.15, 3.4.22.28, 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEGT20A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1834-2293
    Mutation: YES
    Organism Scientific: MENGO ENCEPHALOMYOCARDITIS VIRUS
    Organism Taxid: 12107
    Other Details: M300V 3DPOLYMERASE MUTANT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:236 , ASN A:238 , SER A:241 , ASN A:302 , ASP A:333 , HOH A:690 , HOH A:692 , HOH A:702 , HOH A:736 , HOH A:776binding site for residue GOL A 502
2AC2SOFTWARETYR A:331 , ARG A:382binding site for residue GOL A 503
3AC3SOFTWAREHIS A:57 , ILE A:175 , ASP A:177 , SER A:276 , HIS A:278 , GLY A:289 , GLY A:290 , LEU A:291 , PRO A:292 , HOH A:659 , HOH A:668binding site for residue GOL A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y2C)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:113 -Pro A:114

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y2C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y2C)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y2C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...............ee..hhhhhh..eee............hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhhhh......................hhhhhee....eehhhhhhhhhhhhh......eeeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhh.hhhhh...hhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeee..eeeeee....hhhhhhhhhhh...........................eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y2c A   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSVLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y2C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y2C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y2C)

(-) Gene Ontology  (45, 45)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:113 - Pro A:114   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_ENMGO | P12296: 1mec 2m7y 2mev 2mmh 2mmi 2mmk 2mml 4nyz 4nz0 4y3c

(-) Related Entries Specified in the PDB File

4nyz CONTAINS THE WILD TYPE POLYMERASE OF EMCV.
4nz0 CONTAINS THE WILD TYPE POLYMERASE OF EMCV.