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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   THE EMCV 3DPOL STRUCTURE WITH ALTERED MOTIF A CONFORMATION AT 2.15A RESOLUTION

Authors :   L. Vives-Adrian, C. Lujan, C. Ferrer-Orta, N. Verdaguer

Date :   11 Dec 13 (Deposition) - 19 Mar 14 (Release) - 10 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym./Biol. Unit : A

Keywords :   Encephalomyocarditis Virus, Close Right Hand, Rna Dependent Rna Polymerase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Vives-Adrian, C. Lujan, B. Oliva, L. Van Der Linden, B. Selisko, B. Coutard, B. Canard, F. J. Van Kuppeveld, C. Ferrer-Orta, N. Verdaguer
The Crystal Structure Of A Cardiovirus Rna-Dependent Rna Polymerase Reveals An Unusual Conformation Of The Polymeras Active Site
J. Virol. V. 88 5595 2014
PubMed-ID: 24600002 | Reference-DOI: 10.1128/JVI.03502-13

Molecule 1 - GENOME POLYPROTEIN
	Chains	:	A
	EC Number	:	3.6.1.15, 3.4.22.28, 2.7.7.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETG20A
	Expression System Strain	:	ROSETTA (DE3) PLYS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 1834-2293
	Organism Scientific	:	MENGO VIRUS
	Organism Taxid	:	12107
	Synonym	:	LEADER PROTEIN, PROTEIN VP0, VP4-VP2, PROTEIN VP4, P1A, RHO, VIRION PROTEIN 4, PROTEIN VP2, BETA, P1B, VIRION PROTEIN 2, PROTEIN VP3, GAMMA, P1C, VIRION PROTEIN 3, PROTEIN VP1, ALPHA, P1D, VIRION PROTEIN 1, PROTEIN 2A, P2A, G, PROTEIN 2B, I, P2B, PROTEIN 2C, C, P2C, PROTEIN 3A, P3A, PROTEIN 3B, P3B, H, VPG, PROTEASE 3C, P3C, PICORNAIN 3C, P22, RNA-DIRECTED RNA POLYMERASE 3D-POL, E, P3D-POL

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 3)

No.	Name	Count	Type	Full Name
1	GLN	1	Mod. Amino Acid	GLUTAMINE
2	GOL	1	Ligand/Ion	GLYCEROL
3	MG	1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:236 , ASN A:238 , SER A:241 , THR A:242 , HIS A:243 , GLY A:290 , LEU A:291 , ASP A:333 , HOH A:625 , HOH A:642 , HOH A:692 , HOH A:695 , HOH A:698 , HOH A:707	BINDING SITE FOR RESIDUE GLN A 501
2	AC2	SOFTWARE	ALA A:36 , LYS A:159 , GLU A:161 , ARG A:163 , THR A:173 , ARG A:174	BINDING SITE FOR RESIDUE MG A 502
3	AC3	SOFTWARE	PHE A:33 , LYS A:381 , ALA A:399 , HOH A:677	BINDING SITE FOR RESIDUE GOL A 503

(no "SS Bond" information available for 4NYZ)

Asymmetric/Biological Unit

No.	Residues
1	Leu A:113	-	Pro A:114

(no "SAP(SNP)/Variant" information available for 4NYZ)

(no "PROSITE Motif" information available for 4NYZ)

(no "Exon" information available for 4NYZ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4nyza_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...............ee..hhhhhh..eee............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh......hhhhhhhh......................hhhhhee....eehhhhhhhhhhhhh.......eeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhh.hhhhh...hhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhh...........................eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyz A   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAVFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFWQ 501
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     460|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      501

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: DNA/RNA polymerases (850)

Superfamily: DNA/RNA polymerases (850)

Family: automated matches (16)

Protein domain: automated matches (16)

Mengo virus [TaxId: 12107] (2)

d4nyza_

(no "CATH Domain" information available for 4NYZ)

(no "Pfam Domain" information available for 4NYZ)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Leu A:113 - Pro A:114	[ RasMol ]

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	2.7.7.48
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	3.4.22.28
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	3.6.1.15
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	POLG_ENMGO \| P12296	:	1mec 2m7y 2mev 2mmh 2mmi 2mmk 2mml 4nz0 4y2c 4y3c

1u09	FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE
4nz0

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (45, 45)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File