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(-) Description

Title :  THE EMCV 3DPOL STRUCTURE AT 2.8A RESOLUTION
 
Authors :  L. Vives-Adrian, C. Ferrer-Orta, N. Verdaguer
Date :  11 Dec 13  (Deposition) - 19 Mar 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  D,F  (1x)
Keywords :  Encephalomyocarditis Virus, Close Right Hand, Rna Dependent Rna Polymerase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Vives-Adrian, C. Lujan, B. Oliva, L. Van Der Linden, B. Selisko, B. Coutard, B. Canard, F. J. Van Kuppeveld, C. Ferrer-Orta, N. Verdaguer
The Crystal Structure Of A Cardiovirus Rna-Dependent Rna Polymerase Reveals An Unusual Conformation Of The Polymeras Active Site
J. Virol. V. 88 5595 2014
PubMed-ID: 24600002  |  Reference-DOI: 10.1128/JVI.03502-13

(-) Compounds

Molecule 1 - GENOME POLYPROTEIN
    Chains: A, B, C, D, E, F
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETG20A
    Expression System Strain: ROSETTA (DE3) PLYS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1834-2293
    Organism Scientific: MENGO VIRUS
    Organism Taxid: 12107
    Synonym: LEADER PROTEIN, PROTEIN VP0, VP4-VP2, PROTEIN VP4, P1A, RHO, VIRION PROTEIN 4, PROTEIN VP2, BETA, P1B, VIRION PROTEIN 2, PROTEIN VP3, GAMMA, P1C, VIRION PROTEIN 3, PROTEIN VP1, ALPHA, P1D, VIRION PROTEIN 1, PROTEIN 2A, P2A, G, PROTEIN 2B, I, P2B, PROTEIN 2C, C, P2C, PROTEIN 3A, P3A, PROTEIN 3B, P3B, H, VPG, PROTEASE 3C, P3C, PICORNAIN 3C, P22, RNA-DIRECTED RNA POLYMERASE 3D-POL, E, P3D-POL

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F
Biological Unit 7 (1x):    D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 7 (1, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL5Ligand/IonGLYCEROL

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS D:212 , TYR D:331 , HOH D:604BINDING SITE FOR RESIDUE GOL D 501
2AC2SOFTWARETHR D:447 , SER D:450 , ALA F:252 , LYS F:267 , GLU F:271BINDING SITE FOR RESIDUE GOL D 502
3AC3SOFTWAREARG D:16 , THR D:18 , PRO D:35 , ALA D:36 , LEU D:38 , SER D:39 , ASP D:42 , ARG D:44 , PHE F:459 , TRP F:460BINDING SITE FOR RESIDUE GOL D 503
4AC4SOFTWAREGLY D:410 , LEU D:412BINDING SITE FOR RESIDUE CL D 504
5AC5SOFTWAREARG A:439 , TYR E:318 , GLN E:342 , ASN E:344 , ARG E:347BINDING SITE FOR RESIDUE GOL E 501
6AC6SOFTWAREPRO A:43 , ASP A:46 , TYR E:407 , PRO E:409 , GLY E:410 , THR E:411 , LEU E:412BINDING SITE FOR RESIDUE GOL E 503
7AC7SOFTWAREARG F:284BINDING SITE FOR RESIDUE GOL F 501
8AC8SOFTWARESER D:413 , LEU D:416 , VAL D:443 , THR F:63 , LEU F:64 , PRO F:65BINDING SITE FOR RESIDUE GOL F 502

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:184 -A:295
2B:184 -B:295
3C:184 -C:295
4E:184 -E:295
5F:184 -F:295

(-) Cis Peptide Bonds  (27, 27)

Asymmetric Unit
No.Residues
1Leu A:113 -Pro A:114
2Ala A:362 -Asn A:363
3Asp B:97 -Gly B:98
4Gly B:98 -Leu B:99
5Glu B:100 -Gly B:101
6Leu B:113 -Pro B:114
7Ala B:362 -Asn B:363
8Asp C:97 -Gly C:98
9Gly C:98 -Leu C:99
10Leu C:113 -Pro C:114
11Gly C:294 -Cys C:295
12Ala C:362 -Asn C:363
13Asp D:97 -Gly D:98
14Gly D:98 -Leu D:99
15Glu D:100 -Gly D:101
16Leu D:113 -Pro D:114
17Cys D:295 -Ala D:296
18Lys E:56 -His E:57
19Asp E:97 -Gly E:98
20Glu E:100 -Gly E:101
21Leu E:113 -Pro E:114
22Phe F:54 -Ser F:55
23Ser F:59 -Asn F:60
24Asp F:97 -Gly F:98
25Gly F:98 -Leu F:99
26Glu F:100 -Gly F:101
27Leu F:113 -Pro F:114

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NZ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NZ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4NZ0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4nz0a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..............ee..hhhhhh..eee............hhhhhhhhh.........hhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhhh.hhhhhee....eehhhhhhhhhhhhh.......eeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhhh.........hhhhhhhhhheeeeee..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeee..eeeeee....hhhhhhhhhhhhh..ee.....................eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz0 A   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
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Chain B from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4nz0b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..............ee..hhhhhh..eee..............hhhhhh..........hhhhhhhhhhhhhh...........hhhhhhhh................hhhhh.hhhhhee....eehhhhhhhhhh..........eeeee...eeehhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh......eeeee.......hhhhhhhhhhh..hhhhh...hhhhhhhhhheeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhhh........eeeee..eeeee......hhhhhhhhhhhh..ee.....................eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz0 B   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460


Chain C from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4nz0c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..............ee..hhhhhh..eee............hhhhhhhhh........hhhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhhh.hhhhhh........hhhhhh.............eeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhhhh..........hhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeee..eeeeee....hhhhhhhhhhhhh..ee.....................eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz0 C   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
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Chain D from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4nz0d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..............ee..hhhhhh..eee............hhhhhhhh..........hhhhhhhhhhhhhhhhhhh......hhhhhhhh................hhhhh.hhhhhee....eehhhhhhhhhhhhh.......eeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhheeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhhh...hhh.eeeeee..eeeeee....hhhhhhhhhhhh...ee.....................eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz0 D   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460


Chain E from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4nz0e_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..............ee.hhhhhhh..eee............hhhhhhh...........hhhhhhhhhhhhhhhhhh.......hhhhhhhh......................hhhhhh.......hhhhhhhhhhhhh.......eeeee...eeehhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhh..........hhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh..eee...........hhhh.ee..eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz0 E   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460


Chain F from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4nz0f_ F: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..............ee..hhhhhh..eee............hhhhhhh...........hhhhhhhhhhhhhhhhhhh......hhhhhhhh......................hhhhhee....ee.hhhhhhhhhhhh.......eeeee...eeehhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhhhh..........hhhhhhhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh.eee.................ee..eeeeee..eeeeeehhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz0 F   1 GALERLPDGPRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQETLPPVFRMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDWETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGRQLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMFRLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNIIIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTFPLESTLEDVVFLKRKFKKEGPLYRPVMNREALEAMLSYYRPGTLSEKLTSITMLAVHSGKQEYDRLFAPFREVGVIVPTFESVEYRWRSLFW 460
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   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NZ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NZ0)

(-) Gene Ontology  (45, 45)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
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  Cis Peptide Bonds
    Ala A:362 - Asn A:363   [ RasMol ]  
    Ala B:362 - Asn B:363   [ RasMol ]  
    Ala C:362 - Asn C:363   [ RasMol ]  
    Asp B:97 - Gly B:98   [ RasMol ]  
    Asp C:97 - Gly C:98   [ RasMol ]  
    Asp D:97 - Gly D:98   [ RasMol ]  
    Asp E:97 - Gly E:98   [ RasMol ]  
    Asp F:97 - Gly F:98   [ RasMol ]  
    Cys D:295 - Ala D:296   [ RasMol ]  
    Glu B:100 - Gly B:101   [ RasMol ]  
    Glu D:100 - Gly D:101   [ RasMol ]  
    Glu E:100 - Gly E:101   [ RasMol ]  
    Glu F:100 - Gly F:101   [ RasMol ]  
    Gly B:98 - Leu B:99   [ RasMol ]  
    Gly C:294 - Cys C:295   [ RasMol ]  
    Gly C:98 - Leu C:99   [ RasMol ]  
    Gly D:98 - Leu D:99   [ RasMol ]  
    Gly F:98 - Leu F:99   [ RasMol ]  
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    Leu B:113 - Pro B:114   [ RasMol ]  
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 Related Entries

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        POLG_ENMGO | P12296: 1mec 2m7y 2mev 2mmh 2mmi 2mmk 2mml 4nyz 4y2c 4y3c

(-) Related Entries Specified in the PDB File

1u09 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE
4nyz