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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MURINE NOROVIRUS NS6 PROTEASE (INACTIVE C139A MUTANT) WITH A C-TERMINAL EXTENSION TO INCLUDE RESIDUES P1 PRIME - P2 PRIME OF NS7
 
Authors :  H. Fernandes, E. N. Leen, S. Curry
Date :  27 Nov 14  (Deposition) - 18 Feb 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Murine Norovirus Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Fernandes, E. N. Leen, H. Cromwell, M. P. Pfeil, S. Curry
Structure Determination Of Murine Norovirus Ns6 Proteases With C-Terminal Extensions Designed To Probe Protease-Substrate Interactions.
Peerj V. 3 E798 2015
PubMed-ID: 25755927  |  Reference-DOI: 10.7717/PEERJ.798
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NS6 PROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODONPLUS
    Fragment: UNP RESIDUES 997-1175
    Mutation: YES
    Organism Scientific: MURINE NOROVIRUS 1
    Organism Taxid: 223997

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4X2W)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X2W)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4X2W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeee..eeeee....eeeee..................eeeeee..eeeeee...........ee........eeeeeee.....eeeeeeeeeeeeeeee..eeeeeeeeee..............eeeeee..eeeeeeeeeee.....eeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x2w A   3 VSIWSRVVQFGTGWGFWVSGHVFITAKHVAPPKGTEIFGRKPGDFTVTSSGDFLKYYFTSAVRPDIPAMVLENGCQEGVVASVLVKRASGEMLALAVRMGSQAAIKIGSAVVHGQTGMLLTQDLGTIPGDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPTLEALE 181
                                    12        22        32        42        52        62        72        82        92       102       112       122||     138       148       158       168       178   
                                                                                                                                                  123|                                                   
                                                                                                                                                   130                                                   


Chain B from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee....eeeee..................eeeeee..eeeeee...........ee........eeeeeee.....eeeeeeee...............eeeee...............eeeeee..eeeeeeeeeee.....eeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x2w B   4 SIWSRVVQFGTGWGFWVSGHVFITAKHVAPPKGTEIFGRKPGDFTVTSSGDFLKYYFTSAVRPDIPAMVLENGCQEGVVASVLVKRASGEMLALAVRMGSQAAIKIGSAVVHGQTGMLLTGSDLGTIPGDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPTLEALE 181
                                    13        23        33        43        53        63        73        83        93       103       113       123 ||    138       148       158       168       178   
                                                                                                                                                   125|                                                  
                                                                                                                                                    131
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X2W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X2W)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (18, 18)

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 Related Entries

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UniProtKB/TrEMBL
        Q80J95_9CALI | Q80J95: 2m4g 2mcd 2mch 3nah 3nai 3qid 3sfg 3sfu 3upf 3uqs 3ur0 4ash 4nru 4o4r 4x2v 4x2x 4x2y

(-) Related Entries Specified in the PDB File

4ash THIS ENTRY CONTAINS C TERMINAL EXTENSION TO INCLUDE RESIDUE P1 PRIME AND P2 PRIME OF NS7 IN ADDITION TO 4ASH
4x2v