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(-) Description

Title :  HIGH-RESOLUTION STRUCTURE OF THE NI-BOUND FORM OF THE Y135F MUTANT OF C. METALLIDURANS CNRXS
 
Authors :  A. Volbeda, J. Coves, A. P. Maillard, S. Kuennemann, C. Grosse, G. Schle I. Petit-Haertlein, E. De Rosny, D. H. Nies
Date :  10 Nov 14  (Deposition) - 11 Feb 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.11
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Nickel Sensor, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Maillard, S. Kunnemann, C. Groe, A. Volbeda, G. Schleuder, I. Petit-Hartlein, E. De Rosny, D. H. Nies, J. Coves
Response Of Cnrx From Cupriavidus Metallidurans Ch34 To Nickel Binding.
Metallomics V. 7 622 2015
PubMed-ID: 25628016  |  Reference-DOI: 10.1039/C4MT00293H

(-) Compounds

Molecule 1 - NICKEL AND COBALT RESISTANCE PROTEIN CNRR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET30B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: METAL-SENSOR DOMAIN OF CNRX
    Gene: CNRR, CNRX, RMET_6206, RME0087
    Mutation: YES
    Organism Scientific: RALSTONIA METALLIDURANS
    Organism Taxid: 266264
    Strain: CH34 / ATCC 43123 / DSM 2839

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric Unit (5, 6)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2CO21Ligand/IonCARBON DIOXIDE
3FMT1Ligand/IonFORMIC ACID
4K1Ligand/IonPOTASSIUM ION
5NI1Ligand/IonNICKEL (II) ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CO22Ligand/IonCARBON DIOXIDE
3FMT2Ligand/IonFORMIC ACID
4K-1Ligand/IonPOTASSIUM ION
5NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:42 , HIS A:46 , GLU A:63 , HIS A:119 , MET A:123binding site for residue NI A 201
2AC2SOFTWAREHIS A:46 , PRO A:50 , LEU A:51 , HOH A:341 , HOH A:364 , HOH A:375binding site for residue CL A 202
3AC3SOFTWARETRP A:94 , GLU A:130 , ALA A:134 , HOH A:317 , HOH A:335 , HOH A:389binding site for residue CL A 203
4AC4SOFTWAREHIS A:42 , GLU A:63 , PHE A:66 , ALA A:67 , PRO A:96 , HOH A:311 , HOH A:354 , HOH A:410binding site for residue CO2 A 204
5AC5SOFTWARELEU A:84 , LEU A:117 , LEU A:143 , HOH A:320 , HOH A:327 , HOH A:462binding site for residue K A 205
6AC6SOFTWAREARG A:137 , ASP A:141 , HOH A:304 , HOH A:458 , HOH A:477 , HOH A:516 , HOH A:526binding site for residue FMT A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WWB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WWB)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4wwb A  37 GHGDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGLKPEHRPAFDRVLIDALRRGSQ 148
                                    46        56        66        76        86        96       106       116       126       136       146
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WWB)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (1, 1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CNRR_CUPMC | P37975: 2y39 2y3b 2y3d 2y3g 2y3h 3epv 3zg1 4wwd 4wwf

(-) Related Entries Specified in the PDB File

2y39 NI-BOUND FORM OF CUPRIAVIDUS METALLIDURANS CH34 CNRXS