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(-) Description

Title :  CRYSTAL STRUCTURE OF BINARY COMPLEX BUD32-CGI121
 
Authors :  W. Zhang, H. Van Tilberugh
Date :  10 Nov 14  (Deposition) - 18 Mar 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Keops, Binary Complex, Bud32-Cgi121, Trna T6A, Transferase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, B. Collinet, M. Graille, M. C. Daugeron, N. Lazar, D. Libri, D. Durand, H. Van Tilbeurgh
Crystal Structures Of The Gon7/Pcc1 And Bud32/Cgi121 Complexes Provide A Model For The Complete Yeast Keops Complex.
Nucleic Acids Res. V. 43 3358 2015
PubMed-ID: 25735745  |  Reference-DOI: 10.1093/NAR/GKV155

(-) Compounds

Molecule 1 - EKC/KEOPS COMPLEX SUBUNIT BUD32
    Chains: A
    EC Number: 3.6.-.-, 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: BUD32, LDB14, YGR262C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: ATYPICAL SERINE/THREONINE PROTEIN KINASE BUD32,BUD SITE SELECTION PROTEIN 32,LOW-DYE-BINDING PROTEIN 14,PID261
 
Molecule 2 - EKC/KEOPS COMPLEX SUBUNIT CGI121
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: CGI121, YML036W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CGI-121 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:91 , GLU A:107 , LEU A:109 , HIS A:179 , ARG B:170binding site for residue SO4 A 301
2AC2SOFTWARETHR A:163 , SER A:165binding site for residue SO4 A 302
3AC3SOFTWARESER A:135 , ASP A:136binding site for residue SO4 A 303
4AC4SOFTWAREILE B:134 , GLU B:135 , ASN B:140binding site for residue SO4 B 201
5AC5SOFTWARETYR A:100 , GLU B:63 , ASN B:67 , ARG B:70 , ARG B:143binding site for residue SO4 B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WWA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WWA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WWA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WWA)

(-) Exons   (0, 0)

(no "Exon" information available for 4WWA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeee...eeee.........eeeee..hhhhhhhhhhhhh........eeeee....eeeee....ee....ee.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.ee........eeeeee..eeeeee......ee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wwa A   4 EFIDKVSSYLTPDVDIAPISQGIVFTTTTHPYLPQKYIIKYRRTLNESRLLAKLYLIPGLCVPQLIACDPYNGFIWLEFLGEDLPGGHGFSNLKNFLWMHDQDPYSDLVATTLRKVGRQIGLLHWNDYCHGDLTSSNIVLVRDGARWTPHLIDFGLGSVSNLVEDKGVDLYVLERAILSTHSKHAEKYNAWIMEGFEEVYREQGAKGAKKLKEVTKRFEEVRLR 253
                                    13        23 ||     36   ||   52 ||     79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249    
                                                25|         40|     54|                                                                                                                                                                                     
                                                 29          47      72                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee...hhhhhhhh...eee......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhh.......eeeee...hhhhhhhhhhhhh..eee..hhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wwa B   1 MVVSIIPQFPDIKVSLALFEQVKNAKEIRSKMSFAFIDPRLVCSGEQMYSAIYKTLIEVKYNKMRTRNLNSECVLCLSPTSNISDAFLKFGIKDDSSQLICLKFHVDKEQLRTIMTSIVKGQEIEFNDDNLSRFYDEALIRKIYKLSDDFKPQDVNGLSRALVDAIQLR 179
                                    10        20        30 ||     45        55        65        75        85        95       105    || 120       130       140       150       160       170         
                                                          32|                                                                     110|                                                               
                                                           38                                                                      116
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WWA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WWA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WWA)

(-) Gene Ontology  (31, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4wwa
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  BUD32_YEAST | P53323
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  CG121_YEAST | Q03705
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BUD32_YEAST | P53323: 4ww5 4ww7 4ww9
        CG121_YEAST | Q03705: 4ww5 4ww7 4ww9 4xah

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WWA)