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(-) Description

Title :  CRYSTAL STRUCTURE OF BINARY COMPLEX BUD32-CGI121 IN COMPLEX WITH AMPP
 
Authors :  W. Zhang
Date :  10 Nov 14  (Deposition) - 18 Mar 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Keops, Binary Complex, Bud32-Cgi121, Trna T6A, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, B. Collinet, M. Graille, M. C. Daugeron, N. Lazar, D. Libri, D. Durand, H. Van Tilbeurgh
Crystal Structures Of The Gon7/Pcc1 And Bud32/Cgi121 Complexes Provide A Model For The Complete Yeast Keops Complex.
Nucleic Acids Res. V. 43 3358 2015
PubMed-ID: 25735745  |  Reference-DOI: 10.1093/NAR/GKV155

(-) Compounds

Molecule 1 - EKC/KEOPS COMPLEX SUBUNIT BUD32
    Chains: A
    EC Number: 3.6.-.-, 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: BUD32, LDB14, YGR262C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: ATYPICAL SERINE/THREONINE PROTEIN KINASE BUD32,BUD SITE SELECTION PROTEIN 32,LOW-DYE-BINDING PROTEIN 14,PID261
 
Molecule 2 - EKC/KEOPS COMPLEX SUBUNIT CGI121
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: CGI121, YML036W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CGI-121 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3GOL1Ligand/IonGLYCEROL
4SO45Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:50 , LYS A:52 , ARG A:72 , GLU A:107 , PHE A:108 , LEU A:109 , PHE A:119 , ASP A:182 , PHE A:183 , GLY A:184 , HOH A:470 , HOH A:479binding site for residue ANP A 301
2AC2SOFTWARELEU A:199 , GLU A:203 , ASN A:218 , ILE A:221binding site for residue ACT A 302
3AC3SOFTWAREGLU A:203 , LEU A:207 , ARG A:251binding site for residue ACT A 303
4AC4SOFTWARESER A:135 , ASP A:136 , ARG A:253 , ARG A:257 , HOH A:405binding site for residue SO4 A 304
5AC5SOFTWAREARG A:143 , LYS A:216 , TRP A:220 , GLU A:223binding site for residue SO4 A 305
6AC6SOFTWARECYS A:90 , VAL A:91 , GLU A:107 , HIS A:179 , HOH A:480 , ARG B:170binding site for residue GOL A 306
7AC7SOFTWARETYR B:145 , GLU B:147 , GLN B:163 , ASP B:164binding site for residue ACT B 201
8AC8SOFTWARETYR A:100 , GLU B:63 , ASN B:67 , ARG B:70 , ARG B:143 , HOH B:304 , HOH B:305 , HOH B:306binding site for residue SO4 B 204
9AC9SOFTWARELYS B:68 , ILE B:134 , GLU B:135 , ASN B:140 , HOH B:307 , HOH B:357binding site for residues SO4 B 202 and SO4 B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WW5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WW5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WW5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WW5)

(-) Exons   (0, 0)

(no "Exon" information available for 4WW5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.....eeee..eeeee...............eeeee....hhhhhhhhhhhhhh........eeeee....eeeee....eehhhhee.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.ee........eeeeee..eeeeee......ee..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww5 A   5 FIDKVSSYLTPDVDIAPISQAIVFTTTTHPYLPRAKDSHQKYIIKYRPPHRTLNESRLLAKLYLIPGLCVPQLIACDPYNGFIWLEFLGEDLPGGHGFSNLKNFLWMHDQDPYSDLVATTLRKVGRQIGLLHWNDYCHGDLTSSNIVLVRDGARWTPHLIDFGLGSVSNLVEDKGVDLYVLERAILSTHSKHAEKYNAWIMEGFEEVYREQGAKGAKKLKEVTKRFEEVRLRGRKR 257
                                    14        24|       37        47        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251      
                                              24|                          56|                                                                                                                                                                                          
                                               28                           71                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee...hhhhhhhh......eeehhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhh.......eeeeeee......hhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww5 B   1 MVVSIIPQFPDIKVSLALFEQVKNAKEIRSKMSELSFAFIDPRLVCSGEQMYSAIYKTLIEVKYNKMRTRNLNSECVLCLSPTSNISDAFLKFGIKDDSSQLICLKFHTNTDDVDKEQLRTIMTSIVKGQEIEFNDDNLSRFYDEALIRKIYKLSDDFKPQDVNGLSRALVDAIQLR 179
                                    10        20        30    ||  42        52        62        72        82        92       102       112       122       132       142       152       162       172       
                                                             35|                                                                                                                                             
                                                              38
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WW5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WW5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WW5)

(-) Gene Ontology  (31, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4ww5)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BUD32_YEAST | P53323: 4ww7 4ww9 4wwa
        CG121_YEAST | Q03705: 4ww7 4ww9 4wwa 4xah

(-) Related Entries Specified in the PDB File

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