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(-) Description

Title :  CRYSTAL STRUCTURE OF BINARY COMPLEX BUD32-CGI121 IN COMPLEX WITH AMP
 
Authors :  W. Zhang, H. Van Tilbeurgh
Date :  10 Nov 14  (Deposition) - 18 Mar 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Keops, Binary Complex, Bud32-Cgi121, Trna T6A, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, B. Collinet, M. Graille, M. C. Daugeron, N. Lazar, D. Libri, D. Durand, H. Van Tilbeurgh
Crystal Structures Of The Gon7/Pcc1 And Bud32/Cgi121 Complexes Provide A Model For The Complete Yeast Keops Complex.
Nucleic Acids Res. V. 43 3358 2015
PubMed-ID: 25735745  |  Reference-DOI: 10.1093/NAR/GKV155

(-) Compounds

Molecule 1 - EKC/KEOPS COMPLEX SUBUNIT BUD32
    Chains: A
    EC Number: 3.6.-.-, 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: BUD32, LDB14, YGR262C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: ATYPICAL SERINE/THREONINE PROTEIN KINASE BUD32,BUD SITE SELECTION PROTEIN 32,LOW-DYE-BINDING PROTEIN 14,PID261
 
Molecule 2 - EKC/KEOPS COMPLEX SUBUNIT CGI121
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: CGI121, YML036W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CGI-121 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2AMP1Ligand/IonADENOSINE MONOPHOSPHATE
3SO43Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:23 , VAL A:30 , ILE A:50 , LYS A:52 , GLU A:107 , LEU A:109 , ASP A:182 , HOH A:438 , HOH A:458 , HOH A:472 , HOH A:475 , HOH A:502binding site for residue AMP A 301
2AC2SOFTWAREPHE A:125 , HIS A:129 , TRP A:176binding site for residue ACT A 302
3AC3SOFTWARELEU A:191 , VAL A:192 , GLU A:193 , ARG A:246binding site for residue ACT A 303
4AC4SOFTWAREHIS A:46 , GLN A:47 , HOH A:484binding site for residue ACT A 304
5AC5SOFTWARELEU A:199 , GLU A:203 , ASN A:218 , MET A:222binding site for residue ACT A 305
6AC6SOFTWAREARG A:143 , LYS A:216 , TRP A:220 , GLU A:223binding site for residue SO4 A 306
7AC7SOFTWARESER A:135 , ASP A:136 , ARG A:253 , ARG A:257 , HOH A:408binding site for residue SO4 A 307
8AC8SOFTWARELYS B:68 , ILE B:134 , GLU B:135 , ASN B:140 , HOH B:303binding site for residue SO4 B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WW7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WW7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WW7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WW7)

(-) Exons   (0, 0)

(no "Exon" information available for 4WW7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee...eeeee...............eeeee...hhhhhhhhhhhhh........eeeee....eeeee....eehhhhee.hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.ee........eeeeee..eeeeee......ee..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww7 A   4 EFIDKVSSYLTPDVDIAPISQGAAIVFTTTTHPYLPRAKDSHQKYIIKYRPRTLNESRLLAKLYLIPGLCVPQLIACDPYNGFIWLEFLGEDLPGGHGFSNLKNFLWMHDQDPYSDLVATTLRKVGRQIGLLHWNDYCHGDLTSSNIVLVRDGARWTPHLIDFGLGSVSNLVEDKGVDLYVLERAILSTHSKHAEKYNAWIMEGFEEVYREQGAKGAKKLKEVTKRFEEVRLRGRKR 257
                                    13        23  ||    34        44        54||      80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       
                                                 26|                         55|                                                                                                                                                                                         
                                                  28                          72                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeee...hhhhhhhh...eeehhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhh.......eeeeeee....hhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww7 B   1 MVVSIIPQFPDIKVSLALFEQVKNAKEIRSKMSFAFIDPRLVCSGEQMYSAIYKTLIEVKYNKMRTRNLNSECVLCLSPTSNISDAFLKFGIKDDSSQLICLKFHTDDVDKEQLRTIMTSIVKGQEIEFNDDNLSRFYDEALIRKIYKLSDDFKPQDVNGLSRALVDAIQLR 179
                                    10        20        30 ||     45        55        65        75        85        95       105     ||117       127       137       147       157       167       177  
                                                          32|                                                                      111|                                                                 
                                                           38                                                                       114
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WW7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WW7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WW7)

(-) Gene Ontology  (31, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BUD32_YEAST | P53323: 4ww5 4ww9 4wwa
        CG121_YEAST | Q03705: 4ww5 4ww9 4wwa 4xah

(-) Related Entries Specified in the PDB File

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