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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C89A GMP SYNTHETASE INACTIVE MUTANT FROM PLASMODIUM FALCIPARUM IN COMPLEX WITH GLUTAMINE
 
Authors :  L. Ballut, S. Violot, R. Haser, N. Aghajari
Date :  26 Sep 14  (Deposition) - 02 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gmp Synthetase, Purine Salvage Pathway, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ballut, S. Violot, S. Shivakumaraswamy, L. P. Thota, M. Sathya, J. Kunala, B. W. Dijkstra, R. Terreux, R. Haser, H. Balaram, N. Aghajar
Active Site Coupling In Plasmodium Falciparum Gmp Synthetas Is Triggered By Domain Rotation.
Nat Commun V. 6 8930 2015
PubMed-ID: 26592566  |  Reference-DOI: 10.1038/NCOMMS9930

(-) Compounds

Molecule 1 - GMP SYNTHETASE
    Chains: A
    EC Number: 6.3.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-555
    Gene: PF10_0123
    Mutation: YES
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: ISOLATE 3D7

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GLN1Mod. Amino AcidGLUTAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GLN2Mod. Amino AcidGLUTAMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:58 , TYR A:60 , ALA A:89 , TYR A:90 , GLN A:93 , ASN A:169 , HIS A:170 , ASN A:171 , ASP A:172 , HIS A:208binding site for residue GLN A 601

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:113 -A:377

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:547 -Pro A:548
2Pro A:548 -Pro A:549

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WIO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WIO)

(-) Exons   (0, 0)

(no "Exon" information available for 4WIO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:526
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhh...eeeee....hhhhhh..eeeeee...............hhhhhhhhh.....eeeehhhhhhhhhhh..eeeeeeeeeeeeeeeee...hhhhhh.hhhhh..hhhhhh................eeeeeeeeeeeeee.....eeeeee..eeeeeeee....eeee..........hhhhhhhhhhh.............hhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh...eeeee.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........eeee...hhhhhhhhhh................eee......hhhhhhhhhhhh...hhhhhh.....hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee...eeeeeeeeeeee..eeee...hhhhhhhhhhhhhhhh..eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wio A   7 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGIAYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFSSAMDLYSNYKLMNECLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHELELKNIEKYKHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSKNLSDTIKTHHNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVIGEINKHKLNILREVDDIFINDLKQYGLYNQISQAFAVLLSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVNRILYDVSSKPPATIEFEQ 601
                                    16        26        36        46        56        66        76        86        96       106       116       126      |139       149 ||    161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       398       408       418       428       438       448       458       468       478   ||  500       510       520       530       540       550    ||
                                                                                                                                                        133|           151|                                                                                                                                                                                                                                        389|                                                                                  482|                                                         555|
                                                                                                                                                         137            154                                                                                                                                                                                                                                         397                                                                                   495                                                          601
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WIO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WIO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WIO)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8IJR9_PLAF7 | Q8IJR9: 3uow 4wim 4win

(-) Related Entries Specified in the PDB File

4wim 4WIM CONTAINS THE UNLIGANTED WILD TYPE PROTEIN.
4win 4WIN CONTAINS ONLY THE WILD-TYPE GATASE DOMAIN OF THIS ENTRY.