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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GMP SYNTHETASE FROM PLASMODIUM FALCIPARUM
 
Authors :  L. Ballut, S. Violot, R. Haser, N. Aghajari
Date :  26 Sep 14  (Deposition) - 02 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gmp Synthetase, Purine Salvage Pathway, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ballut, S. Violot, S. Shivakumaraswamy, L. P. Thota, M. Sathya, J. Kunala, B. W. Dijkstra, R. Terreux, R. Haser, H. Balaram, N. Aghajar
Active Site Coupling In Plasmodium Falciparum Gmp Synthetas Is Triggered By Domain Rotation.
Nat Commun V. 6 8930 2015
PubMed-ID: 26592566  |  Reference-DOI: 10.1038/NCOMMS9930

(-) Compounds

Molecule 1 - GMP SYNTHETASE
    Chains: A, B
    EC Number: 6.3.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-554
    Gene: PF10_0123
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: ISOLATE 3D7

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WIM)

(-) Sites  (0, 0)

(no "Site" information available for 4WIM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WIM)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Pro A:548 -Pro A:549
2Lys B:547 -Pro B:548
3Pro B:548 -Pro B:549

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WIM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WIM)

(-) Exons   (0, 0)

(no "Exon" information available for 4WIM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:520
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhh.....eee..............eeeee.............hhhhhhhhhh.......hhhhhhhhhhh...eeee......eeeeeee..hhhhhhh...........hhhhhhhh................eeeeee...eeeee.....ee.ee........eee....eee.........hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh......eeee...hhhhhhhhhhhhh.....eeee.........hhhhhhhhhhhhhh.........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh................hhhhhhh...............hhhhhhhhhhhh..hhhhhh......hhhhh......hhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.....eeeeeee.............hhhhhhhhhhhhhhhh....eeeee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wim A   5 EYDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHELELKNIEKYKHDHYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVIGEINKHKLNILREVDDIFINDLKQYGLYNQISQAFAVLLSSKDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVNRILYDVSSKPPATIEFE 555
                                    14        24        34        44        54    ||  65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375  ||   404       414       424       434       444       454       464       474       484||     505       515       525       535       545       555
                                                                                 59|                                                                                                                                                                                                                                                                                                                          378|                                                                                    485|                                                          
                                                                                  61                                                                                                                                                                                                                                                                                                                           398                                                                                     497                                                          


Chain B from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.....hhhhhhhhhhhh........................ee................hhhhhhhhhhh.....eehhhhhhhhhhh.................ee..hhhhhh..............hhhhh.........ee................eee...ee..ee......eee.ee.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh..........hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh........hhhhhhhhhh...........................hhhhhhhhhhhhhhhhhhhhhhh......eeeeeee.......eeeeeeeeeee..eee....hhhhhhhhhhhhhhhh.....eeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wim B   9 ILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSATCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKFDPIRYHELELKNIEKYKHDHYVIAAMSGGIDSTVAAAYTHKIFKIDNGLLRKNEAENVYTFLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNILYPDIIESKCSKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVIGEINKHKLNILREVDDIFINDLKQYGLYNQISQAFAVLLSSKSYDYVCVLRAVKTSSFMTANWYQIPYDILDKITTRILSEVKGVNRILYDVSSKPPATIEFE 555
                                    18        28        38        48        58        68        78        88        98       108       118       128       138||     160       170       180       190       200       210       220       230|      244       254       264       274    || 291       301       311       321       331       341       351  ||   374    || 406       416       426       436       446       456       466       476       495       505       515       525       535       545       555
                                                                                                                                                            139|                                                                           230|                                         279|                                                                354|        379|                                                                                485|                                                            
                                                                                                                                                             152                                                                            235                                          287                                                                 368         402                                                                                 495
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WIM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WIM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WIM)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys B:547 - Pro B:548   [ RasMol ]  
    Pro A:548 - Pro A:549   [ RasMol ]  
    Pro B:548 - Pro B:549   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8IJR9_PLAF7 | Q8IJR9: 3uow 4win 4wio

(-) Related Entries Specified in the PDB File

4win 4WIN CONTAINS ONLY THE GATASE DOMAIN OF THIS ENTRY.
4wio 4WIO CONTAINS THE C89A MUTANT PROTEIN IN COMPLEX WITH GLUTAMINE.