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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GATASE DOMAIN FROM PLASMODIUM FALCIPARUM GMP SYNTHETASE
 
Authors :  L. Ballut, S. Violot, R. Haser, N. Aghajari
Date :  26 Sep 14  (Deposition) - 02 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Gmp Synthetase, Plasmodium Falciparum, Purine Salvage Pathway, Glutamine Amidotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ballut, S. Violot, S. Shivakumaraswamy, L. P. Thota, M. Sathya, J. Kunala, B. W. Dijkstra, R. Terreux, R. Haser, H. Balaram, N. Aghajar
Active Site Coupling In Plasmodium Falciparum Gmp Synthetas Is Triggered By Domain Rotation.
Nat Commun V. 6 8930 2015
PubMed-ID: 26592566  |  Reference-DOI: 10.1038/NCOMMS9930

(-) Compounds

Molecule 1 - GMP SYNTHETASE
    Chains: A, B
    EC Number: 6.3.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21B(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PF10_0123
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: ISOLATE 3D7

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1NO33Ligand/IonNITRATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NO32Ligand/IonNITRATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NO31Ligand/IonNITRATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:13 , PHE A:19 , THR A:35 , ASN B:13 , PHE B:19 , THR B:35 , LYS B:36 , ASP B:37binding site for residue NO3 A 1001
2AC2SOFTWARESER A:16 , GLN A:17 , TYR A:18 , GLY A:57 , GLY A:58 , HIS A:208 , TYR B:60binding site for residue NO3 A 1002
3AC3SOFTWARETYR A:60 , SER B:16 , GLN B:17 , GLY B:58 , HIS B:208binding site for residue NO3 B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WIN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WIN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WIN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WIN)

(-) Exons   (0, 0)

(no "Exon" information available for 4WIN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhh...eeeee...hhhhhh...eeeeee...............hhhhhhhhhhh...eeeehhhhhhhhhhh..eeeeeeeeeeeeeeeee....hhhhh.hhhhh....hhhhhhhhh......hhhhh.....eeeeeeeeeeeeee.....eeeeee..eeeeeeee....eeee..........hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4win A   6 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKK 233
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225        


Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....hhhhhhhhhhhh..eeeeee...hhhhh....eeeeee...............hhhhhhhhhhh...eeeehhhhhhhhhhh..eeeeeeeeeeeeeeeee.hhhhhhhh.hhhhhh...hhhhhhhhh......hhhhh.....eeeeeeeeeeeeee.....eeeee.......eeee....eeee..........hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4win B   6 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKK 233
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WIN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WIN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WIN)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q8IJR9_PLAF7 | Q8IJR9: 3uow 4wim 4wio

(-) Related Entries Specified in the PDB File

4wim 4WIM CONTAINS THE FULL-LENGTH PROTEIN.
4wio 4WIO CONTAINS THE FULL-LENGTH C89A MUTANT PROTEIN IN COMPLEX WITH GLUTAMINE.