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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL-LENGTH SPLIT GFP MUTANT D21H/K26H WITH COPPER MEDIATED CRYSTAL CONTACTS, P 21 21 21 SPACE GROUP
 
Authors :  D. J. Leibly, G. S. Waldo, T. O. Yeates
Date :  21 Aug 14  (Deposition) - 11 Mar 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Fluorescent Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Leibly, M. A. Arbing, I. Pashkov, N. Devore, G. S. Waldo, T. C. Terwilliger, T. O. Yeates
A Suite Of Engineered Gfp Molecules For Oligomeric Scaffolding.
Structure V. 23 1754 2015
PubMed-ID: 26278175  |  Reference-DOI: 10.1016/J.STR.2015.07.008

(-) Compounds

Molecule 1 - FLUORESCENT PROTEIN D21H/K26H
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric Unit (5, 12)
No.NameCountTypeFull Name
1CRO2Mod. Amino Acid{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
2CU3Ligand/IonCOPPER (II) ION
3GOL4Ligand/IonGLYCEROL
4NHE2Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
5SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1CRO1Mod. Amino Acid{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
2CU-1Ligand/IonCOPPER (II) ION
3GOL2Ligand/IonGLYCEROL
4NHE1Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
5SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
1CRO1Mod. Amino Acid{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
2CU-1Ligand/IonCOPPER (II) ION
3GOL2Ligand/IonGLYCEROL
4NHE1Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
5SO41Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:3 , HIS B:21 , HOH B:419 , HOH B:420binding site for residue CU A 301
02AC2SOFTWAREHIS A:21 , HIS A:26 , HOH A:401 , GLU B:6 , HOH B:426binding site for residue CU A 302
03AC3SOFTWAREHIS A:26 , HOH A:432binding site for residue CU A 303
04AC4SOFTWARELEU A:221 , HOH A:501 , HOH A:514 , HOH A:532 , GLU B:34 , LYS B:41binding site for residue NHE A 304
05AC5SOFTWARELYS A:162 , GLN A:184 , HOH A:408 , ASN B:164 , PHE B:165 , THR B:166 , ASP B:180 , TYR B:182binding site for residue GOL A 305
06AC6SOFTWAREGLU A:142 , ASN A:144 , GLN A:157 , ASN A:170 , HOH A:415 , HOH A:491 , SER B:147 , HIS B:148 , LYS B:149binding site for residue GOL A 306
07AC7SOFTWARETYR A:99 , LYS A:101 , ASP A:102 , HOH A:404 , THR B:97 , LYS B:162 , TYR B:182 , GLN B:184 , GOL B:302 , HOH B:413binding site for residue NHE B 301
08AC8SOFTWARETYR A:99 , ASP A:180 , TYR A:182 , LYS B:162 , ALA B:163 , GLN B:183 , NHE B:301 , HOH B:406binding site for residue GOL B 302
09AC9SOFTWARELYS B:101 , ASP B:102 , VAL B:176 , GLN B:177 , LEU B:178 , HOH B:463binding site for residue GOL B 303
10AD1SOFTWAREARG B:80 , LEU B:195 , HOH B:415 , HOH B:520binding site for residue SO4 B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W7D)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Met A:88 -Pro A:89
2Met B:88 -Pro B:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W7D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W7D)

(-) Exons   (0, 0)

(no "Exon" information available for 4W7D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee.......hhhhhh....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee....................eeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7d A   3 KGEELFTGVVPILIELDGHVNGHHFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLxVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIYFKDDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDGPVDLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTAAGI 229
                                    12        22        32        42        52        62 |||    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224     
                                                                                        64||                                                                                                                                                                 
                                                                                         66-CRO                                                                                                                                                              
                                                                                          68                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee.......hhhhhh....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee....................eeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7d B   5 EELFTGVVPILIELDGHVNGHHFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLxVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIYFKDDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDGPVDLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTAAGIT 230
                                    14        24        34        44        54        64||      76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226    
                                                                                      64||                                                                                                                                                                  
                                                                                       66-CRO                                                                                                                                                               
                                                                                        68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W7D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W7D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W7D)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4W7D)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4w69 4w6a 4w6b 4w6c 4w6d 4w6f 4w6g 4w6h 4w6i 4w6j 4w6k 4w6l 4w6m 4w6n 4w6o 4w6p 4w6r 4w6s 4w6t 4w6u 4w72 4w73 4w74 4w75 4w76 4w77 4w7a 4w7c 4w7e 4w7f 4w7r 4w7x