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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL-LENGTH SPLIT GFP MUTANT E115H/T118H WITH COPPER MEDIATED CRYSTAL CONTACTS, P 43 21 2 SPACE GROUP
 
Authors :  D. J. Leibly, G. S. Waldo, T. O. Yeates
Date :  20 Aug 14  (Deposition) - 18 Feb 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Fluorescent Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Leibly, M. A. Arbing, I. Pashkov, N. Devore, G. S. Waldo, T. C. Terwilliger, T. O. Yeates
A Suite Of Engineered Gfp Molecules For Oligomeric Scaffolding.
Structure V. 23 1754 2015
PubMed-ID: 26278175  |  Reference-DOI: 10.1016/J.STR.2015.07.008

(-) Compounds

Molecule 1 - FLUORESCENT PROTEIN E115H/T118H
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1BR1Ligand/IonBROMIDE ION
2CRO1Mod. Amino Acid{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
3CU2Ligand/IonCOPPER (II) ION
4EDO11Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:25 , HIS A:115 , GLU A:132 , HOH A:427 , HOH A:435binding site for residue CU A 301
02AC2SOFTWAREGLU A:32 , HIS A:118 , ASP A:133 , HOH A:418 , HOH A:433binding site for residue CU A 302
03AC3SOFTWAREILE A:39 , SER A:208 , LYS A:209 , EDO A:304binding site for residue EDO A 303
04AC4SOFTWARETYR A:143 , LYS A:209 , TYR A:223 , EDO A:303 , EDO A:310 , HOH A:502binding site for residue EDO A 304
05AC5SOFTWAREASP A:197 , ASP A:198binding site for residue EDO A 305
06AC6SOFTWAREASN A:164 , PHE A:165 , THR A:166 , ASP A:180 , HIS A:181 , TYR A:182binding site for residue EDO A 306
07AC7SOFTWAREGLU A:34 , LYS A:41 , SER A:43 , HOH A:539binding site for residue EDO A 307
08AC8SOFTWAREARG A:109 , ARG A:122 , GLU A:124binding site for residue EDO A 308
09AC9SOFTWAREASP A:19 , ASP A:21 , GLU A:124 , LEU A:125 , LYS A:126binding site for residue EDO A 309
10AD1SOFTWARETYR A:143 , ASN A:144 , SER A:202 , THR A:203 , GLN A:204 , EDO A:304 , HOH A:426 , HOH A:431 , HOH A:438binding site for residue EDO A 310
11AD2SOFTWARECRO A:66 , GLN A:69 , VAL A:150 , LEU A:201 , THR A:203 , VAL A:224 , HOH A:549 , HOH A:553 , HOH A:554binding site for residue EDO A 311
12AD3SOFTWAREASN A:23 , HIS A:115 , GLY A:116 , HOH A:401 , HOH A:402 , HOH A:405 , HOH A:472binding site for residue EDO A 312
13AD4SOFTWAREGLY A:51 , LYS A:52 , LYS A:214 , ARG A:215 , ASP A:216binding site for residue EDO A 313

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W6T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met A:88 -Pro A:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W6T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W6T)

(-) Exons   (0, 0)

(no "Exon" information available for 4W6T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee.......hhhhhh....hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6t A   2 RKGEELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLxVQAFSRYPDHMKRHDFFKSAMPEGYVQERTIYFKDDGTYKTRAEVKFHGDHLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDGPVDLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTAAGIT 230
                                    11        21        31        41        51        61  |||   73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       
                                                                                         64||                                                                                                                                                                  
                                                                                          66-CRO                                                                                                                                                               
                                                                                           68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W6T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W6T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W6T)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4W6T)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4w69 4w6a 4w6b 4w6c 4w6d 4w6f 4w6g 4w6h 4w6i 4w6j 4w6k 4w6l 4w6m 4w6n 4w6o 4w6p 4w6r 4w6s 4w6u 4w72 4w73 4w74 4w75 4w76 4w77 4w7a 4w7c 4w7d 4w7e 4w7f 4w7r