Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF FULL-LENGTH SPLIT GFP MUTANT D102C DISULFIDE DIMER, P 1 SPACE GROUP
 
Authors :  D. J. Leibly, G. S. Waldo, T. O. Yeates
Date :  20 Aug 14  (Deposition) - 18 Feb 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.47
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,N  (1x)
Biol. Unit 2:  B,I  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,J  (1x)
Biol. Unit 5:  F,O  (1x)
Biol. Unit 6:  G,P  (1x)
Biol. Unit 7:  H,M  (1x)
Biol. Unit 8:  K,L  (1x)
Keywords :  Fluorescent Protein, Dimer, Disulfide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Leibly, M. A. Arbing, I. Pashkov, N. Devore, G. S. Waldo, T. C. Terwilliger, T. O. Yeates
A Suite Of Engineered Gfp Molecules For Oligomeric Scaffolding.
Structure V. 23 1754 2015
PubMed-ID: 26278175  |  Reference-DOI: 10.1016/J.STR.2015.07.008

(-) Compounds

Molecule 1 - FLUORESCENT PROTEIN D102C
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): A            N  
Biological Unit 2 (1x):  B      I       
Biological Unit 3 (1x):   CD            
Biological Unit 4 (1x):     E    J      
Biological Unit 5 (1x):      F        O 
Biological Unit 6 (1x):       G        P
Biological Unit 7 (1x):        H    M   
Biological Unit 8 (1x):           KL    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4W6R)

(-) Sites  (0, 0)

(no "Site" information available for 4W6R)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:102 -N:102
2B:102 -I:102
3C:102 -D:102
4E:102 -J:102
5F:102 -O:102
6G:102 -P:102
7H:102 -M:102
8K:102 -L:102

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Met A:88 -Pro A:89
2Met C:88 -Pro C:89
3Met E:88 -Pro E:89
4Met F:88 -Pro F:89
5Met I:88 -Pro I:89
6Met K:88 -Pro K:89
7Met L:88 -Pro L:89
8Met N:88 -Pro N:89
9Met O:88 -Pro O:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W6R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W6R)

(-) Exons   (0, 0)

(no "Exon" information available for 4W6R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhhhh..hhhhh..hhhhhhhhhhhhh.......eeeeee....eeeeeeee........eeeeeeee....................ee...hhhhh.eeeeeeeeee.....eeeeeeeeee.............ee..eeeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r A   7 LFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDPVDLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTA 226
                                    16        26        36        46        56       |69        79        89        99       109       119       129       139|      150       160       170       180       190|      201       211       221     
                                                                                    64|                                                                    139|                                              190|                                  
                                                                                     68                                                                     141                                               192                                  


Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeee..eeeeeeeeee....eeeeeeee........hhhhhh......hhhhhhhhhhhhh...eeeeeeeee....eeeeeeeeeee..eeeeeeeeee....................eeeeeeeehhhheeeeeeeeeee.....eeeeeeeee.......eeeeeeeeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r B   6 ELFTGVVPILIELDGDVNGHKFFVRGEGEATIGKLSLKFIATTGKLPVPWPTLVTTLVQCYPDHMKRHDFFKSAPEGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDDHYLSTQTILSKDLNEKRDHMVLLEYVTA 226
                                    15        25        37        47        57      ||70|       83   ||   94       104       114       124       134       144       154       164       174       184    || 201       211       221     
                                                       34|                         64| ||           87|                                                                                                 189|                             
                                                        37                          68 ||            89                                                                                                  197                             
                                                                                      70|                                                                                                                                                
                                                                                       74                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhhhh..hhhhh...hhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeehhhheeee..eeeee.....eeeeeeeeeeee...ee...eeee.....eeeeeee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r C   4 GEELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSRYPMKRHDFFKSAMPEGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGHYLSTQTILSKDLRDHMVLLEYVTAAGI 229
                                    13        23        33        43        53        63||      78        88        98       108       118       128 ||    140       150       160       170       180       199       209 ||    222       
                                                                                       64|     75|                                                 130|                                                     189|         211|              
                                                                                        68      78                                                  133                                                      199          215              


Chain D from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.ee....eeee..eee...ee....ee.............hhhhhh..hhhhh..hhhhhhhhhhhhh..eee....ee.....eee..eee...eeeee...................eeeeee......eeeeeeeee.....eeeeeeeee.........eeeeeeeeee.....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r D   4 GEELFTGVVLIELDGDVNGHKFFGEGDATIGKLSLFIATTGKLPVPWPTLVTTLVQCFSRYPDHMKRHDFFKSAMTIYFKCDGTYKTREVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNIKANFTIRHNVEDGSVQLADHYQQNTPIGLPDDHYLSTQTILSKRDHMVLLEYVTAAG 228
                                    15        25  ||    39    ||  50        60   ||   73        83    || 101       112       122       132       142       152     ||164       174       184    || 199       209|      224    
                                   12|           28|         44|                64|                  88|         109|                                            158|                         189|           209|             
                                    15            33          46                 68                   97          111                                             161                          195            215             


Chain E from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeeeeeeeeee.....eeeeeeeee....eeeeeeee........hhhhhh..hhhhh..hhhhh........eeeeeeeee....eeeeeeeee..eeeeeeeeee...................eeeeeeeehhhheeeeeeeeeee.....eeeeeeeeeee......eeeeeeeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r E   4 GEELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSRYPDHMKFKSAMPEGYVQERTIYFKCDGTYKTRAEVKFTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPDLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTAA 227
                                    13        23        33        43        53        63||      76  ||    90       100       110   ||  123       133       143       153       163       173       183   ||  199       209       219        
                                                                                       64|         79|                           114|                                                                  187|                                 
                                                                                        68          84                            118                                                                   194                                 


Chain F from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeeeee...ee..ee..eeeeeeee....eeeeeeee.......hhhhh....hhhhh......hhhhh....eeeeeeeee....eeeeeeee.eeeeeeee...................eeeeeeeehhhheeeeeeeeee....eeeeeeeeeee........eeeeeeeee..........eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r F   4 GEELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSRYPDHDFFKSAMPEGYVQERTIYFKCDGTYKTRAEVVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNGSVQLADHYQQNTPIGDGPPDDHYLSTQTILSKDLNEKRDVLLEYVTA 226
                                    13        23        33        43        53        63||      76||      90       100       110 ||    127       137       147       157       167  ||   180       190 ||    203       213  ||   225 
                                                                                       64|       77|                           112|                                               170|               192|                 216|       
                                                                                        68        82                            120                                                174                196                  219       


Chain G from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee.......hhhhhh................eeeeeee....eeeeeeeeeee..eeeeee.............eeeeeeehhhheeeeeeeeeee.....eeeeeeeeee......eeeee.............eee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r G   7 LFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVVQCFSRDHMKRHDFFVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIPDDHYLSTQTILSKDLNEKRDHMVLLEYVTAAGI 229
                                    16        26        36        46        56    ||  72||      84|      102       112       122  ||   144       154       164       174       184   ||  201       211       221        
                                                                                 61|   73|      84|                             125|                                               188|                                 
                                                                                  68    76       93                              138                                                196                                 


Chain H from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..eeeeeeeeee.....eeeeee.....hhhhhh..hhhhh..hhhhhhhh.......eeeeeeeee....eeeeeeeee..eeeeeeeeee.....................eeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee........eee........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r H  12 VPILIELDGDVNGHKFFVRGEGEGATIGKLSLKFILPVPWPTLVTTLVQCFSRYPDHMKRHDFFKSPEGYVQERTIYFKCDGTYKTRAEVKDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGVDLPDDHYLSTQTIRDHMVLLEYVTAA 227
                                    21        31   ||   42    ||  57      ||70        80     || 92       102       112||     125       135       145       155       165       175       185   ||  198       216       226 
                                                  35|        47|         64|                86|                     113|                                                                     189|          206|            
                                                   37         53          68                 89                      117                                                                      193           215            


Chain I from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeeeee...ee..ee..eeeeeee........eeeee........hhhhhh..hhhhh..hhhhhhhhhhhhh....eeeeeeeee....eeeeeee......eeeeeeee.................eeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee......eeeeeeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r I   4 GEELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIYFKCDGTYKTRAEVGDTLVNRIELKGIDFKNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTA 226
                                    13        23        33        43        53        63||      76        86        96       106     ||119       129 ||    142       152       162       172       182      |197       207       217         
                                                                                       64|                                         112|            131|                                                   189|                               
                                                                                        68                                          116             135                                                    195                               


Chain J from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee..eeeeeeeeeee......eeeee.......hhhhhh...hhhhh......eeeeeee...eeeeeeeeee..eeeeeeeeee................................eeeeeeee.....eeeeeeee........eeeeeeeee....eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r J   6 ELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGSLKFIATTGKLPVPWPTLVTTLVQCFSRYPDHVQERTIYFKCTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDHYLSTQTILSKDLMVLLEYVTAAG 228
                                    15        25        35    ||  47        57      ||70      ||95      |107       117       127       137       147  ||   160       170       180       198       208  ||   224    
                                                             40|                   64|       77|      102|                                          150|                                189|          211|          
                                                              43                    68        93       105                                           154                                 198           218          


Chain K from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee..ee.......................hhhhhh..hhhhh.hhhhh....eeeeeeeee....eeeeeee.eeeeeeeee......................eeeeehhhheeeeeeeeeee.....eeeeeeeeeeee.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r K   7 LFTGVVPILIELDGDVNGHKFFVATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSDFFKSAMPEGYVQERTIYFKCDGTYKTRAELVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDDLPDDHYTILEYVTAAG 228
                                    16        26  ||    43        53        63||   || 85        95       105     ||122       132       142       152       162       172       182       195    || 223     
                                                 29|                         64|  72|                          111|                                                                    190|   200| ||      
                                                  37                          68   82                           119                                                                     194    205 ||      
                                                                                                                                                                                                 207|      
                                                                                                                                                                                                  222      


Chain L from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eeeeeee.....eeee.......hhhhhh...........hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeeehhhheeeeeeeeeee.....eeeeeeeeeeee.........eeeeeeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r L  13 PILIELDGDVNGHKFFVRGEGEGDALKFIATTGKLPVPWPTLVTTLVQCFSKRHDFFKSAMPEGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDGPLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTA 226
                                    22        32    ||  48        58     || 71||      87        97       107       117       127       137       147       157       167       177       187    || 199       209       219       
                                                   37|                  64|  72|                                                                                                              192|                               
                                                    44                   68   79                                                                                                               195                               


Chain M from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeeeee..eeeeeeee..eeee....hhhhhh...hhhhh..hhhhh..eeee....eeeeee...eeeeeeeeee...............ee.eeeee....eeeeeeeeeee.....eeeeeee..eeeeeee........eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w6r M   6 ELFTGVVPILIELDGDVNGHKFFVRGEGSLKFIATTVPWPTLVTTLVQCFSRYPDHMKRRTIYFKCDGTYKTRAEDTLVNRIELKGIDFKILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQLSTQTILSKDLNEKRDHMVLLEYVTAAGIT 230
                                    15        25       |44     || 58     || 71        96       106    || 121       131|      145       155       165       175       202       212       222        
                                                      33|     50|       64|          80|            111|           131|                                            183|                             
                                                       43      55        68           96             117            136                                             201                             


Chain N from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....eee....eeeeeee...hhhhhh.........eeeeeeeee...eeeeeeeeeeee..eeeeeeeeeee...................eeeeeeeehhhheeeeee...ee.....ee..eeeeeee......eeeeeeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w6r N  15 LIELDGDVNGHKGEGDATIGKLSLKFIAPVPWPTLVTTLSAMPEGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLDHYQQNTPIGDPDDHYLSTQTILSKDLNEKRDHMVLLEYVTA 226
                                    24 ||     40       |55        86        96       106       116       126       136       146       156       166       176 ||    187  ||   202       212       222    
                                      26|             48|        64|                                                                                         178|       190|                              
                                       33              54         86                                                                                          180        196                              


Chain O from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhhhh...hhhhhhhhhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeee.....eeeeeeeee............eeeeeeeeee........eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6r O   4 GEELFTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLYPDHMKRHDFFKSAMPEGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGIKANFTIRHNVEDGSVQLADHYQQNTPIGDGDLPDDHYLSTQTILSKDLNEKRDHMVLLEYVTAA 227
                                    13        23        33        43        53        63||      82        92       102       112       122       132       142       152       162       172       182       194       204       214       224   
                                                                                       64|                                                                                                                  191|                                 
                                                                                        74                                                                                                                   194                                 


Chain P from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhhhh..hhhhh..hhhhhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee.....................eee..hhhhh..eeeeeeee.....eeeeeeeee.....eeee.eeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w6r P   8 FTGVVPILIELDGDVNGHKFFVRGEGEGDATIGKLSLKFIATTGKLPVPWPTLVTTLVQCFSRYPDHMKRHDFFKSAMGYVQERTIYFKCDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHKVYITADKQNNGKANFTIRHNVEDGSVQLADHYQQNLPDDHYLSQTILSKDLNEKRDHMVLLEYVTAA 227
                                    17        27        37        47        57      ||70        80       |92       102       112       122       132       142       152       163       173       183 ||    202|      213       223    
                                                                                   64|                  88|                                                                  160|                    185|    202|                       
                                                                                    68                   91                                                                   162                     195     204
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W6R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W6R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W6R)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4W6R)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4w6r)
 
  Sites
(no "Sites" information available for 4w6r)
 
  Cis Peptide Bonds
    Met A:88 - Pro A:89   [ RasMol ]  
    Met C:88 - Pro C:89   [ RasMol ]  
    Met E:88 - Pro E:89   [ RasMol ]  
    Met F:88 - Pro F:89   [ RasMol ]  
    Met I:88 - Pro I:89   [ RasMol ]  
    Met K:88 - Pro K:89   [ RasMol ]  
    Met L:88 - Pro L:89   [ RasMol ]  
    Met N:88 - Pro N:89   [ RasMol ]  
    Met O:88 - Pro O:89   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format | Biol. Unit 7 PNG format | Biol. Unit 8 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4w6r
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4W6R)

(-) Related Entries Specified in the PDB File

4w69 4w6a 4w6b 4w6c 4w6d 4w6f 4w6g 4w6h 4w6i 4w6j 4w6k 4w6l 4w6m 4w6n 4w6o 4w6p 4w6s 4w6t 4w6u 4w72 4w73 4w74 4w75 4w76 4w77 4w7a 4w7c 4w7d 4w7e 4w7f 4w7r 4w7x