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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF THE THIRD COHESIN SCAC IN COMPLEX WITH THE SCAB DOCKERIN WITH A MUTATION IN THE N-TERMINAL HELIX (IN TO SI) FROM ACETIVIBRIO CELLULOLYTICUS DISPLAYING A TYPE I INTERACTION.
 
Authors :  K. Cameron, V. D. Alves, P. Bule, L. M. A. Ferreira, C. M. G. A. Fontes, S. N
Date :  02 Sep 14  (Deposition) - 15 Apr 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Cell Adhesion-Protein Binding Complex, Cellulosome, Type 1 Cohesin- Dockerin Intereactions, Adaptor Scaffoldin Scab, Anchoring Scaffolding Scac (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Cameron, S. Najmudin, V. D. Alves, E. A. Bayer, S. P. Smith, P. Bule, H. Waller, L. M. A. Ferreira, H. J. Gilbert, C. M. G. A. Fontes
Cell-Surface Attachment Of Bacterial Multi-Enzyme Complexes Involves Highly Dynamic Protein-Protein Anchors.
J. Biol. Chem. V. 290 13578 2015
PubMed-ID: 25855788  |  Reference-DOI: 10.1074/JBC.M114.633339
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELLULOSOMAL SCAFFOLDIN ANCHORING PROTEIN C
    Chains: A, C
    Fragment: RESIDUES 326-467
    Organism Scientific: ACETIVIBRIO CELLULOLYTICUS
    Organism Taxid: 35830
    Synonym: SCAC
 
Molecule 2 - CELLULOSOMAL SCAFFOLDIN ADAPTOR PROTEIN B
    Chains: B, D
    Fragment: RESIDUES 868-942
    Mutation: YES
    Organism Scientific: ACETIVIBRIO CELLULOLYTICUS
    Organism Taxid: 35830
    Synonym: SCAB

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric/Biological Unit (4, 26)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2EPE3Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
3MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4SO413Ligand/IonSULFATE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:42 , ASP B:44 , ASN B:46 , SER B:48 , ASP B:53 , HOH B:2069BINDING SITE FOR RESIDUE CA B 200
02AC2SOFTWAREASP B:6 , ASP B:8 , ASN B:10 , SER B:12 , ASP B:17 , HOH B:2013BINDING SITE FOR RESIDUE CA B 201
03AC3SOFTWAREASP D:42 , ASP D:44 , ASN D:46 , SER D:48 , ASP D:53 , HOH D:2055BINDING SITE FOR RESIDUE CA D 200
04AC4SOFTWAREASP D:6 , ASP D:8 , ASN D:10 , SER D:12 , ASP D:17 , HOH D:2012BINDING SITE FOR RESIDUE CA D 201
05AC5SOFTWARESER A:15 , VAL A:16 , HOH A:2041 , HOH A:2047 , HOH A:2235 , HOH A:2236 , ARG B:14 , SER B:15 , VAL B:61BINDING SITE FOR RESIDUE SO4 A1145
06AC6SOFTWARESER C:15 , VAL C:16 , ARG D:14 , SER D:15 , VAL D:61 , HOH D:2027 , HOH D:2028 , HOH D:2072 , HOH D:2073BINDING SITE FOR RESIDUE SO4 D1074
07AC7SOFTWAREGLN A:43 , HOH A:2097 , HOH A:2098 , HOH A:2102 , HOH A:2237 , HOH A:2238 , ASN B:46BINDING SITE FOR RESIDUE SO4 A1146
08AC8SOFTWARELYS B:64 , HOH B:2099 , HOH B:2100 , HOH B:2101 , HOH B:2102 , ALA C:84 , SER C:124 , HOH C:2143BINDING SITE FOR RESIDUE SO4 B1074
09AC9SOFTWARETYR A:134 , ASN A:135 , ASP A:136 , HOH A:2226 , HOH A:2228 , HOH A:2230 , TYR C:134 , ASN C:135 , ASP C:136BINDING SITE FOR RESIDUE SO4 C1147
10BC1SOFTWAREGLU D:35 , TYR D:36 , GLY D:37 , MET D:38 , LEU D:39 , HOH D:2049 , HOH D:2074 , HOH D:2075BINDING SITE FOR RESIDUE SO4 D1075
11BC2SOFTWARETYR A:66 , ASN A:68 , HOH A:2107 , HOH A:2145 , HOH A:2241 , LYS B:28BINDING SITE FOR RESIDUE SO4 A1147
12BC3SOFTWARETYR C:66 , ASN C:68 , HOH C:2098 , HOH C:2134 , HOH C:2137 , LYS D:28BINDING SITE FOR RESIDUE SO4 C1148
13BC4SOFTWAREHOH A:2110 , HOH A:2135 , HOH A:2138 , THR C:63 , THR C:64 , HOH C:2100 , HOH C:2125 , HOH C:2205 , HOH C:2206BINDING SITE FOR RESIDUE SO4 C1149
14BC5SOFTWARETHR A:63 , HOH A:2133 , HOH A:2134 , HOH A:2135 , HOH A:2136 , HOH A:2138 , HOH A:2243 , SER C:49 , ILE C:50 , TYR C:66 , HOH C:2131 , HOH D:2038BINDING SITE FOR RESIDUE SO4 A1150
15BC6SOFTWAREVAL B:19 , HOH B:2034 , HOH B:2104 , HOH B:2106 , HOH B:2107 , HOH B:2108 , HOH B:2109BINDING SITE FOR RESIDUE SO4 B1075
16BC7SOFTWAREHOH A:2221 , GLN C:43 , LYS C:44 , HOH C:2089 , HOH C:2094 , HOH C:2167 , ASN D:46BINDING SITE FOR RESIDUE SO4 C1150
17BC8SOFTWARETYR C:123 , GLU C:128 , LYS C:130 , ASN C:131BINDING SITE FOR RESIDUE SO4 C1151
18BC9SOFTWAREASN A:115 , TYR A:118 , HOH A:2194 , ASN B:30 , ARG C:37 , ASN C:39 , ASN C:115 , TYR C:118 , HOH C:2086 , HOH C:2208 , HOH C:2209 , ASN D:30BINDING SITE FOR RESIDUE EPE C1152
19CC1SOFTWAREGLU B:35 , TYR B:36 , MET B:38 , LEU B:39 , HOH B:2059 , GLU D:35BINDING SITE FOR RESIDUE EPE B1076
20CC2SOFTWARELYS A:99 , SER A:101 , ASP A:102 , SER A:103 , HOH A:2096 , HOH A:2104 , HOH A:2170 , HOH A:2174BINDING SITE FOR RESIDUE EPE A1148
21CC3SOFTWARELYS C:99 , SER C:101 , ASP C:102 , SER C:103 , HOH C:2082 , HOH C:2096 , HOH C:2162 , HOH C:2163BINDING SITE FOR RESIDUE MPD C1153
22CC4SOFTWAREALA A:52 , ILE A:56 , GLU A:57 , ALA C:52 , GLU C:57 , ALA C:59 , HOH C:2056 , HOH C:2114 , HOH C:2123 , HOH C:2211BINDING SITE FOR RESIDUE MPD C1154
23CC5SOFTWARESER A:124 , GLY A:125 , THR A:126 , HOH A:2204 , HOH A:2242 , LYS D:64 , HOH D:2033BINDING SITE FOR RESIDUE MPD A1149
24CC6SOFTWAREGLU A:69 , HOH A:2152 , ILE B:49 , HOH B:2072 , ALA C:117 , TYR C:118 , HOH C:2180BINDING SITE FOR RESIDUE MPD C1155
25CC7SOFTWAREALA A:117 , TYR A:118 , HOH A:2190 , GLU C:69 , ASN C:70 , ILE D:49 , HOH D:2060BINDING SITE FOR RESIDUE MPD D1076
26CC8SOFTWAREHOH A:2065 , HOH A:2128 , SER C:49 , ASP C:51 , ASN C:97 , SER D:15 , ARG D:22 , HOH D:2037 , HOH D:2076 , HOH D:2077BINDING SITE FOR RESIDUE MPD D1077

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UYP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UYP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UYP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UYP)

(-) Exons   (0, 0)

(no "Exon" information available for 4UYP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..eee....eeeeeeeee........eeeeeee.....eeeeeeee.....hhh.eeeeee....eeeeeee............eeeeeeeeee........eeeeee.....eeeee..ee....eee.eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uyp A   1 MLQVDIGSTSGKAGSVVSVPITFTNVPKSGIYALSFRTNFDPQKVTVASIDAGSLIENASDFTTYYNNENGFASMTFEAPVDRARIIDSDGVFATINFKVSDSAKVGELYNITTNSAYTSFYYSGTDEIKNVVYNDGKIEVIAL 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    


Chain B from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.........hhhhhhh.......hhhhhhhhhhhhh.....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4uyp B   1 KFIYGDVDGNGSVRSIDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKINDAVLVRDYVLGKIFLFPVEEK  73
                                    10        20        30        40        50        60        70   


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eee....eeeeeeeee........eeeeeee.....eeeeeeee.....hhh.eeeeee....eeeeeee............eeeeeeeeee........eeeeee.....eeeee..ee....eee.eeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uyp C   1 MLQVDIGSTSGKAGSVVSVPITFTNVPKSGIYALSFRTNFDPQKVTVASIDAGSLIENASDFTTYYNNENGFASMTFEAPVDRARIIDSDGVFATINFKVSDSAKVGELYNITTNSAYTSFYYSGTDEIKNVVYNDGKIEVIALEH 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain D from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.........hhhhhhh.......hhhhhhhhhhhhh.....hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4uyp D   1 KFIYGDVDGNGSVRSIDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKINDAVLVRDYVLGKIFLFPVEEK  73
                                    10        20        30        40        50        60        70
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UYP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UYP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UYP)

(-) Gene Ontology  (3, 6)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q7WYN2_9FIRM | Q7WYN2: 4uyq
        Q7WYN3_9FIRM | Q7WYN3: 1qzn 1zv9 3bwz 3f2l 3fnk 3ghp 3l8q 4u3s 4uyq 4wi0

(-) Related Entries Specified in the PDB File

4uyq HIGH RESOLUTION STRUCTURE OF THE THIRD COHESIN SCAC IN COMPLEX WITH THE SCAB DOCKERIN WITH A MUTATION IN THE C-TERMINAL HELIX (IN TO SI) FROM ACETIVIBRIO CELLULOLYTICUS DISPLAYING A TYPE I INTERACTION.
4uz8 THE SEMET STRUCTURE OF THE FAMILY 46 CARBOHYDRATE- BINDING MODULE (CBM46) OF ENDO-BETA-1,4-GLUCANASE B (CEL5B) FROM BACILLUS HALODURANS
4uzn THE NATIVE STRUCTURE OF THE FAMILY 46 CARBOHYDRATE- BINDING MODULE (CBM46) OF ENDO-BETA-1,4-GLUCANASE B (CEL5B) FROM BACILLUS HALODURANS
4uzp HIGH RESOLUTION STRUCTURE OF THE FULL LENGTH TRI- MODULAR ENDO-BETA-1,4-GLUCANASE B (CEL5B) FROM BACILLUS HALODURANS