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(-) Description

Title :  THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
 
Authors :  J. J. G. Winter, M. Anderson, K. Blades, C. Brassington, A. L. Breeze, C. K. Embrey, G. Fairley, P. Faulder, M. R. V. Finlay, J. G. Kettle, T. Nowa R. Overman, S. J. Patel, P. Perkins, L. Spadola, J. Tart, J. Tucker, G. W
Date :  02 Jul 14  (Deposition) - 04 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  R,S
Keywords :  Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Winter, M. Anderson, K. Blades, C. Chresta, K. J. Embrey, G. Fairley P. Faulder, M. R. V. Finlay, J. G. Kettle, T. Nowak, R. Overman, S. J. Patel, P. Perkins, L. Spadola, J. Tart, J. A. Tucker, G. Wrigley
Small Molecule Binding Sites On The Ras:Sos Complex Can Be Exploited For Inhibition Of Ras Activation.
J. Med. Chem. V. 58 2265 2015
PubMed-ID: 25695162  |  Reference-DOI: 10.1021/JM501660T

(-) Compounds

Molecule 1 - GTPASE HRAS
    Chains: R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-166
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: COVALENT LINK TO COMPOUND VIA CYS 118
    Synonym: H-RAS, H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, GTPASE HRAS, N-TERMINALLY PROCESSED
 
Molecule 2 - SON OF SEVENLESS HOMOLOG 1
    Chains: S
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 564-1049
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SON OF SEVENLESS-1, SOS-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : RS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1L711Ligand/Ion(3S)-3-[3-(AMINOMETHYL)PHENYL]-1-ETHYLPYRROLIDINE-2,5-DIONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY R:13 , VAL R:14 , GLY R:15 , ALA R:83 , ASN R:85 , CYS R:118 , ASP R:119 , GLU S:942BINDING SITE FOR RESIDUE L71 R1167

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4US1)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro S:924 -Pro S:925
2Asn S:1020 -Pro S:1021

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4US1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4US1)

(-) Exons   (0, 0)

(no "Exon" information available for 4US1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain R from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......hhhhhhhhh..........hhhh.eeeeee..eeeeeeeee......hhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4us1 R    0 HMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH  166
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       


Chain S from PDB  Type:PROTEIN  Length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhh......eeeeeee......eeeeeehhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...eeee..eeeeehhhhhhhhhhhhhhhhh.........hhhhhhhhhh.......hhhhhhhhhhhhhhhhh............................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4us1 S  565 EQMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPELSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIAFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNP 1045
                                   574       584       594       604       614       624       634       644       654|      679       689       699       709       719       729       739   ||  759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      
                                                                                                                   654|                                                                      743|                                                                                                                                                                                                                                                                                                   
                                                                                                                    670                                                                       754
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4US1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4US1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4US1)

(-) Gene Ontology  (97, 110)

Asymmetric/Biological Unit(hide GO term definitions)

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  4us1
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  RASH_HUMAN | P01112
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  SOS1_HUMAN | Q07889
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RASH_HUMAN | P01112: 121p 1aa9 1agp 1bkd 1clu 1crp 1crq 1crr 1ctq 1gnp 1gnq 1gnr 1he8 1iaq 1ioz 1jah 1jai 1k8r 1lf0 1lf5 1lfd 1nvu 1nvv 1nvw 1nvx 1p2s 1p2t 1p2u 1p2v 1plj 1plk 1pll 1q21 1qra 1rvd 1wq1 1xcm 1xd2 1xj0 1zvq 1zw6 221p 2c5l 2ce2 2cl0 2cl6 2cl7 2clc 2cld 2evw 2gdp 2lcf 2lwi 2n42 2n46 2q21 2quz 2rga 2rgb 2rgc 2rgd 2rge 2rgg 2uzi 2vh5 2x1v 3ddc 3i3s 3k8y 3k9l 3k9n 3kkm 3kkn 3kud 3l8y 3l8z 3lbh 3lbi 3lbn 3lo5 3oiu 3oiv 3oiw 3rry 3rrz 3rs0 3rs2 3rs3 3rs4 3rs5 3rs7 3rsl 3rso 3tgp 421p 4dlr 4dls 4dlt 4dlu 4dlv 4dlw 4dlx 4dly 4dlz 4dst 4dsu 4efl 4efm 4efn 4g0n 4g3x 4k81 4l9s 4l9w 4nyi 4nyj 4nym 4q21 4rsg 4uru 4urv 4urw 4urx 4ury 4urz 4us0 4us2 4xvq 4xvr 521p 5b2z 5b30 5e95 5p21 621p 6q21 721p 821p
        SOS1_HUMAN | Q07889: 1awe 1bkd 1dbh 1nvu 1nvv 1nvw 1nvx 1q9c 1xd2 1xd4 1xdv 2ii0 3ksy 4nyi 4nyj 4nym 4uru 4urv 4urw 4urx 4ury 4urz 4us0 4us2

(-) Related Entries Specified in the PDB File

4uru THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urv THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urw THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urx THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4ury THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urz THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4us0 THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4us2 THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS