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(-) Description

Title :  1.80A RESOLUTION STRUCTURE OF IRON BOUND BFRB (C89S, K96C) FROM PSEUDOMONAS AERUGINOSA
 
Authors :  S. Lovell, K. P. Battaile, H. Yao, R. Kumar, K. Eshelman, M. Rivera
Date :  05 Jun 14  (Deposition) - 11 Feb 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (6x)
Keywords :  Electron Transport, Iron Storage, Iron Binding, Iron Mobilization, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yao, H. Rui, R. Kumar, K. Eshelman, S. Lovell, K. P. Battaile, W. Im, M. Rivera
Concerted Motions Networking Pores And Distant Ferroxidase Centers Enable Bacterioferritin Function And Iron Traffic.
Biochemistry V. 54 1611 2015
PubMed-ID: 25640193  |  Reference-DOI: 10.1021/BI501255R

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    Chains: A, B, C, D
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: ARCTIC EXPRESS RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BFRB, PA3531
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (6x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 43)

Asymmetric Unit (4, 43)
No.NameCountTypeFull Name
1FE237Ligand/IonFE (II) ION
2HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3K1Ligand/IonPOTASSIUM ION
4SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 252)
No.NameCountTypeFull Name
1FE2222Ligand/IonFE (II) ION
2HEM18Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3K-1Ligand/IonPOTASSIUM ION
4SO412Ligand/IonSULFATE ION

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:10 , HIS A:107 , HOH A:347 , HOH A:348 , HOH A:352 , HOH A:390binding site for residue FE2 A 201
02AC2SOFTWAREGLU A:18 , GLU A:51 , HIS A:54 , GLU A:127binding site for residue FE2 A 202
03AC3SOFTWAREGLU A:51 , GLU A:94 , GLU A:127 , HIS A:130 , HOH A:476binding site for residue FE2 A 203
04AC4SOFTWAREHIS A:155 , HOH A:351 , HIS B:153 , HOH B:322 , HOH B:332 , HOH B:336binding site for residue FE2 A 204
05AC5SOFTWAREASP A:34 , HOH A:304 , HOH A:308 , HOH A:375 , HOH B:302 , HOH B:315 , HOH B:331binding site for residue FE2 A 205
06AC6SOFTWAREHOH A:421 , HOH A:454 , ASP B:34 , HOH B:362 , HOH B:375 , HOH B:494 , HOH D:346binding site for residue FE2 A 206
07AC7SOFTWAREASP A:132 , HOH A:340 , HOH A:341 , HOH A:357 , HOH C:302 , HOH C:318binding site for residue FE2 A 207
08AC8SOFTWAREHIS A:46 , HOH A:479 , HOH A:480binding site for residue FE2 A 208
09AC9SOFTWAREHOH A:461binding site for residue FE2 A 210
10AD1SOFTWAREGLU A:85 , GLN A:142binding site for residue FE2 A 211
11AD2SOFTWARELYS A:121 , HOH A:305 , HOH A:307 , HOH A:316 , HOH A:320 , HOH A:322 , HOH A:371 , HOH A:455 , ASP C:118 , LYS C:121 , HOH C:314 , LYS D:121 , HOH D:407binding site for residue SO4 A 212
12AD3SOFTWAREASN A:148 , GLN A:151 , ASN B:148 , GLN B:151 , ASN C:148 , GLN C:151 , ASN D:148 , GLN D:151binding site for residue K B 201
13AD4SOFTWARELEU A:19 , ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , LYS A:53 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , ILE B:49 , MET B:52 , LYS B:53 , LEU B:71 , HOH B:357 , HOH B:398 , HOH B:431 , HOH B:432 , HOH B:456 , HOH B:480binding site for residue HEM B 202
14AD5SOFTWAREHIS B:10 , HIS B:107 , HOH B:374 , HOH B:392 , HOH B:408 , HOH B:415binding site for residue FE2 B 203
15AD6SOFTWAREGLU B:18 , GLU B:51 , HIS B:54 , GLU B:127binding site for residue FE2 B 204
16AD7SOFTWAREGLU B:51 , GLU B:94 , GLU B:127 , HIS B:130 , HOH B:353binding site for residue FE2 B 205
17AD8SOFTWAREHIS B:155 , HOH B:354 , HIS D:153 , HOH D:335 , HOH D:340 , HOH D:352binding site for residue FE2 B 206
18AD9SOFTWAREASP B:118 , GLU B:125 , HOH B:303 , HOH B:304 , HOH B:318 , HOH B:337binding site for residue FE2 B 207
19AE1SOFTWAREASP B:132 , HOH B:317 , HOH B:334 , HOH B:501binding site for residue FE2 B 208
20AE2SOFTWAREHIS B:46 , HOH B:421 , HOH B:436 , HOH B:490 , HOH B:491 , HOH B:502binding site for residue FE2 B 209
21AE3SOFTWAREASP B:118 , LYS B:121 , HOH B:303 , HOH B:304 , HOH B:313binding site for residue SO4 B 211
22AE4SOFTWARELEU C:19 , ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , LYS C:53 , HOH C:301 , HOH C:306 , HOH C:308binding site for residue HEM C 201
23AE5SOFTWAREHIS C:10 , HIS C:107 , HOH C:379 , HOH C:397 , HOH C:427 , HOH C:467binding site for residue FE2 C 202
24AE6SOFTWAREGLU C:18 , GLU C:51 , HIS C:54 , GLU C:127binding site for residue FE2 C 203
25AE7SOFTWAREGLU C:51 , GLU C:94 , GLU C:127 , HIS C:130 , HOH C:361binding site for residue FE2 C 204
26AE8SOFTWAREHIS A:153 , HOH A:328 , HOH A:346 , HOH A:350 , HIS C:155 , HOH C:347binding site for residue FE2 C 205
27AE9SOFTWAREHIS C:153 , HOH C:360 , HOH C:375 , HOH C:405 , HIS D:155 , HOH D:351binding site for residue FE2 C 206
28AF1SOFTWAREGLU A:125 , HOH A:305 , HOH A:320 , HOH A:358 , ASP C:118 , HOH C:333binding site for residue FE2 C 207
29AF2SOFTWAREHOH A:326 , ASP C:34 , HOH C:303 , HOH C:305 , HOH C:313 , HOH C:346binding site for residue FE2 C 208
30AF3SOFTWAREHOH C:304 , HOH C:327 , ASP D:34 , HOH D:304 , HOH D:308 , HOH D:326 , HOH D:359binding site for residue FE2 C 209
31AF4SOFTWAREASP C:132 , HOH C:339 , HOH C:476 , HOH D:410binding site for residue FE2 C 210
32AF5SOFTWAREHIS C:46 , HOH C:419 , HOH C:447 , HOH C:471binding site for residue FE2 C 211
33AF6SOFTWARELEU D:19 , ILE D:22 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , LYS D:53 , LEU D:71 , HOH D:301 , HOH D:302binding site for residue HEM D 201
34AF7SOFTWAREHIS D:10 , HIS D:107 , HOH D:374 , HOH D:385 , HOH D:397 , HOH D:403binding site for residue FE2 D 202
35AF8SOFTWAREGLU D:18 , GLU D:51 , HIS D:54 , GLU D:127binding site for residue FE2 D 203
36AF9SOFTWAREGLU D:51 , GLU D:94 , GLU D:127 , HIS D:130 , HOH D:355binding site for residue FE2 D 204
37AG1SOFTWAREASP A:118 , HOH A:371 , HOH A:398 , GLU D:125 , HOH D:407 , HOH D:470binding site for residue FE2 D 205
38AG2SOFTWAREHOH A:307 , GLU C:125 , HOH C:314 , HOH C:348 , ASP D:118 , HOH D:313binding site for residue FE2 D 206
39AG3SOFTWAREHOH B:495 , ASP D:132 , HOH D:381 , HOH D:392 , HOH D:469binding site for residue FE2 D 207
40AG4SOFTWAREHIS D:46 , HOH D:387 , HOH D:420binding site for residue FE2 D 208
41AG5SOFTWAREHOH D:480binding site for residue FE2 D 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TOH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TOH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TOH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TOH)

(-) Exons   (0, 0)

(no "Exon" information available for 4TOH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4toh A   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      


Chain B from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4toh B   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      


Chain C from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4toh C   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      


Chain D from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4toh D   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TOH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TOH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TOH)

(-) Gene Ontology  (8, 8)

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        Q9HY79_PSEAE | Q9HY79: 3is7 3is8 3ise 3isf 4e6k 4to9 4toa 4tob 4toc 4tod 4toe 4tof 4tog 5d8o 5d8p 5d8q 5d8r 5d8s 5d8x 5d8y

(-) Related Entries Specified in the PDB File

4to9 4toa 4tob 4toc 4tod 4toe 4tof 4tog