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(-) Description

Title :  1.80A RESOLUTION STRUCTURE OF BFRB (C89S, K96C) CRYSTAL FORM 2 FROM PSEUDOMONAS AERUGINOSA
 
Authors :  S. Lovell, K. P. Battaile, H. Yao, R. Kumar, K. Eshelman, M. Rivera
Date :  05 Jun 14  (Deposition) - 11 Feb 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (6x)
Keywords :  Electron Transport, Iron Storage, Iron Binding, Iron Mobilization, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yao, H. Rui, R. Kumar, K. Eshelman, S. Lovell, K. P. Battaile, W. Im, M. Rivera
Concerted Motions Networking Pores And Distant Ferroxidase Centers Enable Bacterioferritin Function And Iron Traffic.
Biochemistry V. 54 1611 2015
PubMed-ID: 25640193  |  Reference-DOI: 10.1021/BI501255R

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    Chains: A, B, C, D
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: ARCTIC EXPRESS RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BFRB, PA3531
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (6x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric Unit (5, 17)
No.NameCountTypeFull Name
1HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2K1Ligand/IonPOTASSIUM ION
3MPD7Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA4Ligand/IonSODIUM ION
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 72)
No.NameCountTypeFull Name
1HEM18Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2K-1Ligand/IonPOTASSIUM ION
3MPD42Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA-1Ligand/IonSODIUM ION
5SO412Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:19 , ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , LYS A:53 , HOH A:364 , HOH A:375 , HOH A:412 , HOH A:413 , HOH A:422 , HOH A:457 , HOH A:461 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , ILE B:49 , MET B:52 , LYS B:53 , LEU B:71binding site for residue HEM A 201
02AC2SOFTWARELYS A:2 , GLY A:3 , VAL A:111 , ASP A:113 , HOH A:377 , ARG D:102binding site for residue MPD A 202
03AC3SOFTWAREARG A:61 , HOH A:383binding site for residue MPD A 203
04AC4SOFTWARETHR A:136 , HOH A:335 , HOH A:343 , ASP C:34binding site for residue NA A 204
05AC5SOFTWAREASN A:148 , GLN A:151 , ASN B:148 , GLN B:151 , ASN C:148 , GLN C:151 , ASN D:148 , GLN D:151binding site for residue K B 201
06AC6SOFTWARELYS B:2 , GLY B:3 , ARG B:102 , VAL B:111 , ASP B:113 , HOH B:366binding site for residue MPD B 202
07AC7SOFTWAREGLU B:60 , ARG B:61 , HOH B:306 , HOH B:354binding site for residue MPD B 203
08AC8SOFTWAREASP A:34 , HOH A:333 , ASP B:132 , THR B:136 , HOH B:311binding site for residue NA B 204
09AC9SOFTWAREARG B:117 , ASP B:118 , LYS B:121 , HOH B:314binding site for residue SO4 B 205
10AD1SOFTWARELEU C:19 , ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , ILE C:49 , MET C:52 , LYS C:53 , HOH C:303 , HOH C:304binding site for residue HEM C 201
11AD2SOFTWAREGLU C:60 , ARG C:61 , HOH C:335binding site for residue MPD C 202
12AD3SOFTWAREASP C:132 , THR C:136 , HOH C:317 , ASP D:34 , HOH D:457binding site for residue NA C 203
13AD4SOFTWARELEU D:19 , ILE D:22 , ASN D:23 , PHE D:26 , TYR D:45 , ILE D:49 , MET D:52 , LYS D:53 , LEU D:71 , HOH D:301 , HOH D:307binding site for residue HEM D 201
14AD5SOFTWARELYS D:2 , GLY D:3 , VAL D:111 , ASP D:113 , HOH D:342binding site for residue MPD D 202
15AD6SOFTWAREARG D:61 , HOH D:310 , HOH D:416binding site for residue MPD D 203
16AD7SOFTWAREASP B:34 , HOH B:454 , ASP D:132 , THR D:136 , HOH D:455binding site for residue NA D 204
17AD8SOFTWAREARG A:117 , ASP A:118 , LYS A:121 , ARG C:117 , ASP C:118 , LYS C:121 , ARG D:117 , ASP D:118 , LYS D:121 , HOH D:317 , HOH D:325 , HOH D:354binding site for residue SO4 D 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TOG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TOG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TOG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TOG)

(-) Exons   (0, 0)

(no "Exon" information available for 4TOG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tog A   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      


Chain B from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tog B   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      


Chain C from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tog C   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHED 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       


Chain D from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4tog D   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHE 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TOG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TOG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TOG)

(-) Gene Ontology  (8, 8)

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        Q9HY79_PSEAE | Q9HY79: 3is7 3is8 3ise 3isf 4e6k 4to9 4toa 4tob 4toc 4tod 4toe 4tof 4toh 5d8o 5d8p 5d8q 5d8r 5d8s 5d8x 5d8y

(-) Related Entries Specified in the PDB File

4to9 4toa 4tob 4toc 4tod 4toe 4tof 4toh