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(-) Description

Title :  1.65A RESOLUTION STRUCTURE OF BFRB (C89S, K96C) CRYSTAL FORM 1 FROM PSEUDOMONAS AERUGINOSA
 
Authors :  S. Lovell, K. P. Battaile, H. Yao, R. Kumar, K. Eshelman, M. Rivera
Date :  05 Jun 14  (Deposition) - 11 Feb 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (6x)
Keywords :  Electron Transport, Iron Storage, Iron Binding, Iron Mobilization, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yao, H. Rui, R. Kumar, K. Eshelman, S. Lovell, K. P. Battaile, W. Im, M. Rivera
Concerted Motions Networking Pores And Distant Ferroxidase Centers Enable Bacterioferritin Function And Iron Traffic.
Biochemistry V. 54 1611 2015
PubMed-ID: 25640193  |  Reference-DOI: 10.1021/BI501255R

(-) Compounds

Molecule 1 - BACTERIOFERRITIN
    Chains: A, B, C, D
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: ARCTIC EXPRESS RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BFRB, PA3531
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (6x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric Unit (4, 20)
No.NameCountTypeFull Name
1HEM3Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2K1Ligand/IonPOTASSIUM ION
3MPD12Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA4Ligand/IonSODIUM ION
Biological Unit 1 (2, 90)
No.NameCountTypeFull Name
1HEM18Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2K-1Ligand/IonPOTASSIUM ION
3MPD72Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NA-1Ligand/IonSODIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:19 , ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , LYS A:53 , HOH A:387 , HOH A:421 , HOH A:448 , HOH A:460 , HOH A:461 , HOH A:463 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , ILE B:49 , MET B:52 , LYS B:53 , ILE B:59 , LEU B:71binding site for residue HEM A 201
02AC2SOFTWARELYS A:2 , GLY A:3 , VAL A:111 , HIS A:112 , ASP A:113 , HOH A:389 , ARG D:102binding site for residue MPD A 202
03AC3SOFTWAREARG A:39 , HIS A:43 , TYR A:133 , HOH A:416 , LYS C:38 , HOH C:327binding site for residue MPD A 203
04AC4SOFTWAREARG A:61 , HOH A:411 , HOH A:492 , GLU D:129binding site for residue MPD A 204
05AC5SOFTWAREASP A:132 , THR A:136 , HOH A:322 , ASP C:34 , HOH C:312binding site for residue NA A 205
06AC6SOFTWAREASN A:148 , GLN A:151 , ASN B:148 , GLN B:151 , ASN C:148 , GLN C:151 , ASN D:148 , GLN D:151binding site for residue K B 201
07AC7SOFTWARELYS B:2 , GLY B:3 , ARG B:102 , VAL B:111 , HIS B:112 , ASP B:113 , HOH B:355binding site for residue MPD B 202
08AC8SOFTWARELYS A:38 , HOH A:331 , ARG B:39 , HIS B:43 , HOH B:356binding site for residue MPD B 203
09AC9SOFTWAREGLU B:60 , ARG B:61 , PHE B:64 , GLU B:129 , HOH B:302 , HOH B:336 , HOH B:489binding site for residue MPD B 204
10AD1SOFTWAREASP A:34 , HOH A:323 , ASP B:132 , THR B:136 , HOH B:320binding site for residue NA B 205
11AD2SOFTWARELEU C:19 , ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , ILE C:49 , MET C:52 , LYS C:53 , HOH C:301 , HOH C:302 , HOH C:303binding site for residue HEM C 201
12AD3SOFTWAREARG A:102 , LYS C:2 , GLY C:3 , VAL C:111 , HIS C:112 , ASP C:113 , HOH C:374binding site for residue MPD C 202
13AD4SOFTWAREARG C:39 , HIS C:43 , TYR C:133 , HOH C:470 , LYS D:38 , HIS D:155binding site for residue MPD C 203
14AD5SOFTWAREGLU A:129 , GLU C:60 , ARG C:61 , HOH C:304 , HOH C:472binding site for residue MPD C 204
15AD6SOFTWAREASP C:132 , THR C:136 , HOH C:341 , HOH C:360 , ASP D:34 , HOH D:474binding site for residue NA C 205
16AD7SOFTWARELEU D:19 , ILE D:22 , ASN D:23 , PHE D:26 , TYR D:45 , ILE D:49 , MET D:52 , LYS D:53 , ILE D:59 , HOH D:301 , HOH D:306binding site for residue HEM D 201
17AD8SOFTWAREARG C:102 , LYS D:2 , GLY D:3 , VAL D:111 , HIS D:112 , ASP D:113 , HOH D:339binding site for residue MPD D 202
18AD9SOFTWARELYS B:38 , HIS B:155 , HOH B:492 , ARG D:39 , HIS D:43 , TYR D:133 , HOH D:356 , HOH D:436binding site for residue MPD D 203
19AE1SOFTWAREGLU C:129 , GLU D:60 , ARG D:61 , HOH D:303 , HOH D:370binding site for residue MPD D 204
20AE2SOFTWAREASP B:34 , HOH B:347 , ASP D:132 , THR D:136 , HOH D:333 , HOH D:475binding site for residue NA D 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TOF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TOF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TOF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TOF)

(-) Exons   (0, 0)

(no "Exon" information available for 4TOF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tof A   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHED 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       


Chain B from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tof B   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHED 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       


Chain C from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tof C   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHED 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       


Chain D from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tof D   1 MKGDKKVIQHLNKILGNELIAINQYFLHSRMWNDWGLKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQKVGLENYLQSHMHED 157
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TOF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TOF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TOF)

(-) Gene Ontology  (8, 8)

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        Q9HY79_PSEAE | Q9HY79: 3is7 3is8 3ise 3isf 4e6k 4to9 4toa 4tob 4toc 4tod 4toe 4tog 4toh 5d8o 5d8p 5d8q 5d8r 5d8s 5d8x 5d8y

(-) Related Entries Specified in the PDB File

4to9 4toa 4tob 4toc 4tod 4toe 4tog 4toh