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(-) Description

Title :  STRUCTURE OF THREE PHASE PARTITION - TREATED LIPASE FROM THERMOMYCES LANUGINOSA IN COMPLEX WITH LAURIC ACID AT 2.1 A RESOLUTION
 
Authors :  M. Kumar, J. Mukherjee, M. N. Gupta, M. Sinha, P. Kaur, S. Sharma, T. P. Si
Date :  07 Jan 15  (Deposition) - 11 Feb 15  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kumar, J. Mukherjee, M. N. Gupta, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Structure Of Three Phase Partition - Treated Lipase From Thermomyces Lanuginosa In Complex With Lauric Acid At 2. 1 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPASE
    Chains: A, B
    EC Number: 3.1.1.3
    Organism Scientific: THERMOMYCES LANUGINOSUS
    Organism Taxid: 5541
    Synonym: TRIACYLGLYCEROL LIPASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 13)

Asymmetric/Biological Unit (6, 13)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2DAO1Ligand/IonLAURIC ACID
3EDO1Ligand/Ion1,2-ETHANEDIOL
4GOL6Ligand/IonGLYCEROL
5NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
6XXH1Ligand/Ion4-NITROBENZALDEHYDE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:33 , ASP A:48BINDING SITE FOR RESIDUE NAG A 301
02AC2SOFTWAREARG A:160 , LEU A:185 , THR A:186 , GLN A:188 , GLY A:191 , THR A:192 , LEU A:193 , HOH A:453 , HOH A:489BINDING SITE FOR RESIDUE GOL A 302
03AC3SOFTWAREARG A:84 , SER A:85 , ILE A:86 , GLU A:87 , THR A:267BINDING SITE FOR RESIDUE GOL A 303
04AC4SOFTWAREASN A:11 , PRO A:229 , VAL A:230 , PHE A:262BINDING SITE FOR RESIDUE GOL A 304
05AC5SOFTWAREASN A:94 , PHE A:95 , PHE A:211 , HOH A:478BINDING SITE FOR RESIDUE GOL A 305
06AC6SOFTWAREASN A:92 , ASN A:94 , HOH A:456 , HOH A:524BINDING SITE FOR RESIDUE ACT A 306
07AC7SOFTWAREASP A:62 , VAL A:63 , THR A:64 , ARG A:81 , GLY A:82 , SER A:83 , ARG A:84 , SER A:85 , ASN A:88 , TRP A:89 , LEU A:147 , LEU A:151BINDING SITE FOR RESIDUE DAO A 307
08AC8SOFTWAREASN B:33 , ASP B:48 , HOH B:506BINDING SITE FOR RESIDUE NAG B 301
09AC9SOFTWARETHR B:231 , ARG B:232BINDING SITE FOR RESIDUE GOL B 302
10BC1SOFTWARESER B:58 , GLY B:59BINDING SITE FOR RESIDUE GOL B 303
11BC2SOFTWARELEU A:227 , GLN B:15 , ASN B:39 , PHE B:262 , HOH B:420 , HOH B:427BINDING SITE FOR RESIDUE EDO B 304
12BC3SOFTWAREASN B:94 , HIS B:110 , GLY B:112 , HOH B:537BINDING SITE FOR RESIDUE ACT B 305
13BC4SOFTWARESER A:3 , HOH A:467 , HOH A:485 , ASP B:5 , ASN B:8 , GLN B:9 , LEU B:12 , PHE B:13 , ASN B:73 , LEU B:75 , ARG B:139BINDING SITE FOR RESIDUE XXH B 306

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:268
2A:36 -A:41
3A:104 -A:107
4B:22 -B:268
5B:36 -B:41
6B:104 -B:107

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:206 -Pro A:207
2Ser A:217 -Pro A:218
3Leu B:206 -Pro B:207
4Ser B:217 -Pro B:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4S0X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4S0X)

(-) Exons   (0, 0)

(no "Exon" information available for 4S0X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh....................hhhhhh..eeeeeeeeee....eeeeeeee....eeeeee....hhhhhhhh....eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s0x A   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         


Chain B from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh.................hhhhhh..eeeeeeeeee....eeeeeeee....eeeeee....hhhhhhhh....eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh......eeeee........hhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4s0x B   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4S0X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4S0X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4S0X)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:206 - Pro A:207   [ RasMol ]  
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    Ser A:217 - Pro A:218   [ RasMol ]  
    Ser B:217 - Pro B:218   [ RasMol ]  
 

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  LIP_THELA | O59952
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LIP_THELA | O59952: 1dt3 1dt5 1dte 1du4 1ein 1gt6 1tib 4dyh 4ea6 4flf 4gbg 4ghw 4gi1 4glb 4gwl 4kjx 4n8s 4zgb 5ap9

(-) Related Entries Specified in the PDB File

4ea6