4RUM - JenaLib

Title :   CRYSTAL STRUCTURE OF THE NICO TRANSITION-METAL RIBOSWITCH BOUND TO COBALT

Authors :   A. Ramesh, W. C. Winkler

Date :   21 Nov 14 (Deposition) - 08 Apr 15 (Release) - 08 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.64

Chains :   Asym./Biol. Unit : A

Keywords :   Rna Helix, Ligand Sensor, Cobalt And Nickel Binding, Rna, Riboswitch (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Furukawa, A. Ramesh, Z. Zhou, Z. Weinberg, T. Vallery, W. C. Winkler R. R. Breaker
Bacterial Riboswitches Cooperatively Bind Ni(2+) Or Co(2+) Ions And Control Expression Of Heavy Metal Transporters.
Mol. Cell V. 57 1088 2015
PubMed-ID: 25794617 | Reference-DOI: 10.1016/J.MOLCEL.2015.02.009

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 16)

Sites (13, 13)

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	A A:25 , C A:51 , G A:52 , A A:61	BINDING SITE FOR RESIDUE K A 101
02	AC2	SOFTWARE	U A:49 , G A:58 , HOH A:209 , HOH A:218 , HOH A:234	BINDING SITE FOR RESIDUE K A 102
03	AC3	SOFTWARE	GTP A:6 , HOH A:261 , HOH A:262 , HOH A:269	BINDING SITE FOR RESIDUE K A 103
04	AC4	SOFTWARE	G A:29	BINDING SITE FOR RESIDUE K A 105
05	AC5	SOFTWARE	G A:86 , HOH A:273 , HOH A:274 , HOH A:275	BINDING SITE FOR RESIDUE K A 106
06	AC6	SOFTWARE	G A:46 , G A:47 , G A:86 , G A:87 , HOH A:201 , HOH A:202 , HOH A:203	BINDING SITE FOR RESIDUE CO A 108
07	AC7	SOFTWARE	G A:46 , G A:87 , G A:88 , HOH A:214 , HOH A:216 , HOH A:217	BINDING SITE FOR RESIDUE CO A 109
08	AC8	SOFTWARE	A A:14 , G A:45 , HOH A:208 , HOH A:212 , HOH A:213 , HOH A:220	BINDING SITE FOR RESIDUE CO A 110
09	AC9	SOFTWARE	G A:18 , HOH A:206 , HOH A:207 , HOH A:210 , HOH A:211 , HOH A:236	BINDING SITE FOR RESIDUE CO A 111
10	BC1	SOFTWARE	G A:15 , A A:41 , HOH A:228 , HOH A:229	BINDING SITE FOR RESIDUE MG A 112
11	BC2	SOFTWARE	HOH A:285 , HOH A:286	BINDING SITE FOR RESIDUE MG A 113
12	BC3	SOFTWARE	GTP A:6 , HOH A:263 , HOH A:266	BINDING SITE FOR RESIDUE SR A 114
13	BC4	SOFTWARE	G A:52 , HOH A:283	BINDING SITE FOR RESIDUE GOL A 115

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA/RNA  Length:93
                                                                                                                            
                  4rum A  6 gGGAACUGAGCAGGCAAUGACCAGAGCGGUCAUGCAGCCGGGCUGCGAAAGCGGCAACAGAUGAUACACGCACAUCUGUGGGACAGUUCCCAC 99
                            |       15        25        35        45        55        65    ||  76        86        96   
                            |                                                              70|                           
                            6-GTP                                                           72

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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