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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE NICO TRANSITION-METAL RIBOSWITCH BO COBALT
Keywords RNA HELIX, LIGAND SENSOR, COBALT AND NICKEL BINDING, RNA, RI
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4RUM     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    A 93 1963 32
2  Ligand   NICO RIBOSWITCH RNA  A 15 0 28
3 Water     88 0 88
total       196 1963 148

Nucleic acids
Unit 1 GTP6 G7 G8 A9 A10 C11 U12 G13 A14 G15 C16 A17 G18 G19 C20 A21 A22 U23 G24 A25 C26 C27 A28 G29 A30 G31 C32 G33 G34 U35 C36 A37 U38 G39 C40 A41 G42 C43 C44 G45 G46 G47 C48 U49 G50 C51 G52 A53 A54 A55 G56 C57 G58 G59 C60 A61 A62 C63 A64 G65 A66 U67 G68 A69 U70 A72 C73 A74 C75 G76 C77 A78 C79 A80 U81 C82 U83 G84 U85 G86 G87 G88 A89 C90 A91 G92 U93 U94 C95 C96 C97 A98 C99

Ligands
Unit 2 K101 K102 K103 K104 K105 K106 K107 CO108 CO109 CO110 CO111 MG112 MG113 SR114 GOL115

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany