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4RUM
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NICO TRANSITION-METAL RIBOSWITCH BOUND TO COBALT
Authors
:
A. Ramesh, W. C. Winkler
Date
:
21 Nov 14 (Deposition) - 08 Apr 15 (Release) - 08 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.64
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rna Helix, Ligand Sensor, Cobalt And Nickel Binding, Rna, Riboswitch
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Furukawa, A. Ramesh, Z. Zhou, Z. Weinberg, T. Vallery, W. C. Winkler R. R. Breaker
Bacterial Riboswitches Cooperatively Bind Ni(2+) Or Co(2+) Ions And Control Expression Of Heavy Metal Transporters.
Mol. Cell V. 57 1088 2015
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
2a: GLYCEROL (GOLa)
3a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: STRONTIUM ION (SRa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CO
4
Ligand/Ion
COBALT (II) ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
GTP
1
Mod. Nucleotide
GUANOSINE-5'-TRIPHOSPHATE
4
K
7
Ligand/Ion
POTASSIUM ION
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
SR
1
Ligand/Ion
STRONTIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
A A:25 , C A:51 , G A:52 , A A:61
BINDING SITE FOR RESIDUE K A 101
02
AC2
SOFTWARE
U A:49 , G A:58 , HOH A:209 , HOH A:218 , HOH A:234
BINDING SITE FOR RESIDUE K A 102
03
AC3
SOFTWARE
GTP A:6 , HOH A:261 , HOH A:262 , HOH A:269
BINDING SITE FOR RESIDUE K A 103
04
AC4
SOFTWARE
G A:29
BINDING SITE FOR RESIDUE K A 105
05
AC5
SOFTWARE
G A:86 , HOH A:273 , HOH A:274 , HOH A:275
BINDING SITE FOR RESIDUE K A 106
06
AC6
SOFTWARE
G A:46 , G A:47 , G A:86 , G A:87 , HOH A:201 , HOH A:202 , HOH A:203
BINDING SITE FOR RESIDUE CO A 108
07
AC7
SOFTWARE
G A:46 , G A:87 , G A:88 , HOH A:214 , HOH A:216 , HOH A:217
BINDING SITE FOR RESIDUE CO A 109
08
AC8
SOFTWARE
A A:14 , G A:45 , HOH A:208 , HOH A:212 , HOH A:213 , HOH A:220
BINDING SITE FOR RESIDUE CO A 110
09
AC9
SOFTWARE
G A:18 , HOH A:206 , HOH A:207 , HOH A:210 , HOH A:211 , HOH A:236
BINDING SITE FOR RESIDUE CO A 111
10
BC1
SOFTWARE
G A:15 , A A:41 , HOH A:228 , HOH A:229
BINDING SITE FOR RESIDUE MG A 112
11
BC2
SOFTWARE
HOH A:285 , HOH A:286
BINDING SITE FOR RESIDUE MG A 113
12
BC3
SOFTWARE
GTP A:6 , HOH A:263 , HOH A:266
BINDING SITE FOR RESIDUE SR A 114
13
BC4
SOFTWARE
G A:52 , HOH A:283
BINDING SITE FOR RESIDUE GOL A 115
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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