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(-) Description

Title :  CRYSTAL STRUCTURE OF P38 ALPHA MAP KINASE IN COMPLEX WITH A NOVEL ISOFORM SELECTIVE DRUG CANDIDATE
 
Authors :  V. L. Grum-Tokars, G. Minasov, S. M. Roy, W. F. Anderson, D. M. Watterson
Date :  14 Aug 14  (Deposition) - 25 Feb 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym./Biol. Unit :  A
Keywords :  Serine/Threonine-Protein Kinase, Protein Kinase Domain, Transferase, Atp Binding, Phosphorylation, Cytosol, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. M. Roy, V. L. Grum-Tokars, J. P. Schavocky, F. Saeed, A. Staniszewski, A. F. Teich, O. Arancio, A. D. Bachstetter, S. J. Webster, L. J. Van Eldik, G. Minasov, W. F. Anderson, J. C. Pelletier, D. M. Watterson
Targeting Human Central Nervous System Protein Kinases: An Isoform Selective P38 Alpha Mapk Inhibitor That Attenuates Disease Progression In Alzheimer'S Disease Mouse Models.
Acs Chem Neurosci V. 6 666 2015
PubMed-ID: 25676389  |  Reference-DOI: 10.1021/ACSCHEMNEURO.5B00002

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 14
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MAPK14, CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 14, MAPK 14, CYTOKINE SUPPRESSIVE ANTI- INFLAMMATORY DRUG-BINDING PROTEIN, CSAID-BINDING PROTEIN, CSBP, MAP KINASE MXI2, MAX-INTERACTING PROTEIN 2, MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA, MAP KINASE P38 ALPHA, STRESS-ACTIVATED PROTEIN KINASE 2A, SAPK2A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
13GF2Ligand/Ion6-(4-METHYLPIPERAZIN-1-YL)-3-(NAPHTHALEN-2-YL)-4-(PYRIDIN-4-YL)PYRIDAZINE
2CL1Ligand/IonCHLORIDE ION
3CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
4GG51Ligand/Ion4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:191 , GLU A:192 , LEU A:195 , TRP A:197 , PRO A:242 , LEU A:246 , LYS A:249 , ILE A:250 , ILE A:259 , LEU A:291 , SER A:293BINDING SITE FOR RESIDUE GG5 A 401
2AC2SOFTWAREALA A:51 , LYS A:53 , LEU A:104 , VAL A:105 , THR A:106 , HIS A:107 , MET A:109 , SER A:154 , LEU A:167 , ASP A:168 , HOH A:599BINDING SITE FOR RESIDUE 3GF A 402
3AC3SOFTWAREGLU A:22 , ARG A:23 , THR A:44 , ILE A:229 , SER A:254 , TYR A:258 , ASP A:283 , HOH A:571BINDING SITE FOR RESIDUE 3GF A 403
4AC4SOFTWAREGLY A:31 , SER A:32 , GLY A:33BINDING SITE FOR RESIDUE CL A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R3C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R3C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R3C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R3C)

(-) Exons   (0, 0)

(no "Exon" information available for 4R3C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee....eeeee..eeeeeeeee...eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.........eee....hhhhh...eeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhh.......hhhhhh..hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r3c A   4 ERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDcELKILDFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPP 352
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163     ||186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346      
                                                                                                                                                                                        162-CME169|                                                                                                                                                                         
                                                                                                                                                                                                183
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R3C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R3C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R3C)

(-) Gene Ontology  (84, 84)

Asymmetric/Biological Unit(hide GO term definitions)

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  MK14_HUMAN | Q16539
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK14_HUMAN | Q16539: 1a9u 1bl6 1bl7 1bmk 1di9 1ian 1kv1 1kv2 1m7q 1ouk 1ouy 1ove 1oz1 1r39 1r3c 1w7h 1w82 1w83 1w84 1wbn 1wbo 1wbs 1wbt 1wbv 1wbw 1wfc 1yqj 1zyj 1zz2 1zzl 2baj 2bak 2bal 2baq 2fsl 2fsm 2fso 2fst 2gfs 2i0h 2lgc 2npq 2okr 2onl 2qd9 2rg5 2rg6 2y8o 2yis 2yiw 2yix 2zaz 2zb0 2zb1 3bv2 3bv3 3bx5 3c5u 3ctq 3d7z 3d83 3ds6 3dt1 3e92 3e93 3fc1 3fi4 3fkl 3fkn 3fko 3fl4 3fln 3flq 3fls 3flw 3fly 3flz 3fmh 3fmj 3fmk 3fml 3fmm 3fmn 3fsf 3fsk 3gc7 3gcp 3gcq 3gcs 3gcu 3gcv 3gfe 3gi3 3ha8 3hec 3heg 3hl7 3hll 3hp2 3hp5 3hrb 3hub 3huc 3hv3 3hv4 3hv5 3hv6 3hv7 3hvc 3iph 3itz 3iw5 3iw6 3iw7 3iw8 3k3i 3k3j 3kf7 3kq7 3l8s 3l8x 3lfa 3lfb 3lfc 3lfd 3lfe 3lff 3lhj 3mgy 3mh0 3mh1 3mh2 3mh3 3mpa 3mpt 3mvl 3mvm 3mw1 3new 3nnu 3nnv 3nnw 3nnx 3nww 3o8p 3o8t 3o8u 3obg 3obj 3oc1 3ocg 3od6 3ody 3odz 3oef 3pg3 3qud 3que 3rin 3roc 3s3i 3s4q 3u8w 3uvp 3uvq 3uvr 3zs5 3zsg 3zsh 3zsi 3zya 4a9y 4aa0 4aa4 4aa5 4aac 4dli 4dlj 4e5a 4e5b 4e6a 4e6c 4e8a 4eh2 4eh3 4eh4 4eh5 4eh6 4eh7 4eh8 4eh9 4ehv 4ewq 4f9w 4f9y 4fa2 4geo 4kin 4kip 4kiq 4l8m 4zth 5eta 5etc 5etf 5eti 5ml5 5tbe 5tco

(-) Related Entries Specified in the PDB File

4ewq P38 ALPHA MAPK IN COMPLEX WITH 3-PHENYL-4-(PYRIDIN-4-YL)-6- [4-(PYRIMIDIN- 2-YL)PIPERAZIN-1-YL]PYRIDAZINE
4f9w P38 ALPHA MAPK IN COMPLEX WITH N,N-DIMETHYL-6-(NAPHTHALEN- 2-YL)-5-(PYRIDIN- 4-YL)PYRIDAZIN-3-AMINE
4f9y P38 ALPHA MAPK IN COMPLEX WITH N,N-DIMETHYL-6-(NAPHTHALEN- 1-YL)-5-(PYRIDIN- 4-YL)PYRIDAZIN-3-AMINE