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(-) Description

Title :  HUMAN P38 ALPHA MAPK IN COMPLEX WITH A PYRIDAZINE BASED INHIBITOR
 
Authors :  V. Grum-Tokars, G. Minasov, S. Roy, J. Schavocky, J Winsor, D. M. Watte W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  27 Apr 12  (Deposition) - 27 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Serine/Threonine-Protein Kinase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Protein Kinase Domain, Transferase, Atp Binding, Phosphorylation, Cytosol, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Grum-Tokars, G. Minasov, S. Roy, J. Schavocky, J Winsor, D. M. Watterson, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Human P38 Alpha Map Kinase In Complex With A Pyridazine Based Inhibitor
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 14
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MITOGEN-ACTIVATED PROTEIN KINASE 14
    Gene: MAPK14, CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAP KINASE 14, MAPK 14, CYTOKINE SUPPRESSIVE ANTI- INFLAMMATORY DRUG-BINDING PROTEIN, CSAID-BINDING PROTEIN, CSBP, MAP KINASE MXI2, MAX-INTERACTING PROTEIN 2, MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA, MAP KINASE P38 ALPHA, STRESS-ACTIVATED PROTEIN KINASE 2A, SAPK2A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 10)

Asymmetric/Biological Unit (9, 10)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3CL1Ligand/IonCHLORIDE ION
4GG51Ligand/Ion4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE
5GOL1Ligand/IonGLYCEROL
6MWL2Ligand/Ion3-PHENYL-4-(PYRIDIN-4-YL)-6-[4-(PYRIMIDIN-2-YL)PIPERAZIN-1-YL]PYRIDAZINE
7PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
8TPO1Mod. Amino AcidPHOSPHOTHREONINE
9ZN1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:192 , LEU A:195 , TRP A:197 , PRO A:242 , LEU A:246 , LYS A:249 , ILE A:250 , ILE A:259 , LEU A:291 , SER A:293 , HOH A:530BINDING SITE FOR RESIDUE GG5 A 401
2AC2SOFTWARETYR A:35 , ALA A:51 , LYS A:53 , ILE A:84 , LEU A:104 , THR A:106 , HIS A:107 , LEU A:108 , MET A:109 , SER A:154 , ASN A:155 , LEU A:167 , ASP A:168BINDING SITE FOR RESIDUE MWL A 402
3AC3SOFTWARETHR A:7 , GLU A:22 , ARG A:23 , THR A:44 , ILE A:229 , SER A:254 , ASN A:257 , TYR A:258 , ALA A:271 , PRO A:279 , VAL A:282BINDING SITE FOR RESIDUE MWL A 403
4AC4SOFTWAREHIS A:64 , ASP A:161 , GLU A:178 , TPO A:180BINDING SITE FOR RESIDUE ZN A 404
5AC5SOFTWAREHIS A:142 , GLN A:202 , ALA A:299 , HOH A:591BINDING SITE FOR RESIDUE CL A 405
6AC6SOFTWAREGLN A:120 , CYS A:162BINDING SITE FOR RESIDUE BME A 406
7AC7SOFTWAREPHE A:8 , ARG A:10 , GLU A:22 , MET A:268 , ASN A:269 , PHE A:270 , ALA A:271 , GLU A:286BINDING SITE FOR RESIDUE GOL A 407
8AC8SOFTWAREPRO A:6 , ASP A:88 , VAL A:89BINDING SITE FOR RESIDUE ACT A 408
9AC9SOFTWAREGLN A:128 , GLN A:264 , LEU A:280 , ALA A:306 , ALA A:309BINDING SITE FOR RESIDUE PEG A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EWQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EWQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4EWQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4ewqa_ A: MAP kinase p38                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eeeeeeeee...eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhh.........eee....hhhhh...eeeee...eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhh........hhh.eee.....eee.....................hhhhhh.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhh.......hhhhhh..hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewq A   5 RPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFARHTDDEMtGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPL 353
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164    || 176   |   186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       
                                                                                                                                                                                              169|     180-TPO                                                                                                                                                                         
                                                                                                                                                                                               172
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EWQ)

(-) Gene Ontology  (84, 84)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK14_HUMAN | Q16539: 1a9u 1bl6 1bl7 1bmk 1di9 1ian 1kv1 1kv2 1m7q 1ouk 1ouy 1ove 1oz1 1r39 1r3c 1w7h 1w82 1w83 1w84 1wbn 1wbo 1wbs 1wbt 1wbv 1wbw 1wfc 1yqj 1zyj 1zz2 1zzl 2baj 2bak 2bal 2baq 2fsl 2fsm 2fso 2fst 2gfs 2i0h 2lgc 2npq 2okr 2onl 2qd9 2rg5 2rg6 2y8o 2yis 2yiw 2yix 2zaz 2zb0 2zb1 3bv2 3bv3 3bx5 3c5u 3ctq 3d7z 3d83 3ds6 3dt1 3e92 3e93 3fc1 3fi4 3fkl 3fkn 3fko 3fl4 3fln 3flq 3fls 3flw 3fly 3flz 3fmh 3fmj 3fmk 3fml 3fmm 3fmn 3fsf 3fsk 3gc7 3gcp 3gcq 3gcs 3gcu 3gcv 3gfe 3gi3 3ha8 3hec 3heg 3hl7 3hll 3hp2 3hp5 3hrb 3hub 3huc 3hv3 3hv4 3hv5 3hv6 3hv7 3hvc 3iph 3itz 3iw5 3iw6 3iw7 3iw8 3k3i 3k3j 3kf7 3kq7 3l8s 3l8x 3lfa 3lfb 3lfc 3lfd 3lfe 3lff 3lhj 3mgy 3mh0 3mh1 3mh2 3mh3 3mpa 3mpt 3mvl 3mvm 3mw1 3new 3nnu 3nnv 3nnw 3nnx 3nww 3o8p 3o8t 3o8u 3obg 3obj 3oc1 3ocg 3od6 3ody 3odz 3oef 3pg3 3qud 3que 3rin 3roc 3s3i 3s4q 3u8w 3uvp 3uvq 3uvr 3zs5 3zsg 3zsh 3zsi 3zya 4a9y 4aa0 4aa4 4aa5 4aac 4dli 4dlj 4e5a 4e5b 4e6a 4e6c 4e8a 4eh2 4eh3 4eh4 4eh5 4eh6 4eh7 4eh8 4eh9 4ehv 4f9w 4f9y 4fa2 4geo 4kin 4kip 4kiq 4l8m 4r3c 4zth 5eta 5etc 5etf 5eti 5ml5 5tbe 5tco

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