4QST - JenaLib

Title :   STRUCTURE OF THE BROMODOMAIN OF HUMAN ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2 (ATAD2) IN COMPLEX WITH 1-METHYLQUINOLIN 2-ONE

Authors :   A. Chaikuad, I. Felletar, F. Von Delft, C. H. Arrowsmith, A. M. Edwards C. Bountra, S. Knapp, Structural Genomics Consortium (Sgc)

Date :   06 Jul 14 (Deposition) - 23 Jul 14 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Structural Genomics Consortium (Sgc), Signaling Protein, Bromodomain, Actyl-Lysine Binding, Atpase Family Aaa Domain-Containing Protein 2, Epigenetics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Chaikuad, A. M. Petros, O. Fedorov, J. Xu, S. Knapp
Structure-Based Approaches Towards Identification Of Fragments For The Low-Druggability Atad2 Bromodomain
Medchemcomm V. 5 1843 2014
PubMed: search | Reference-DOI: 10.1039/C4MD00237G

Compounds

Molecule 1 - ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2
	Chains	:	A
	EC Number	:	3.6.1.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21-R3-PRARE2
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	BROMODOMAIN (RESIDUES 981-1108)
	Gene	:	ATAD2, L16, PRO2000
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	AAA NUCLEAR COREGULATOR CANCER-ASSOCIATED PROTEIN, ANCCA

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 18)

Asymmetric Unit (3, 18)

No.	Name	Count	Type	Full Name
1	12Q	1	Ligand/Ion	1-METHYLQUINOLIN-2(1H)-ONE
2	EDO	15	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 18)

No.	Name	Count	Type	Full Name
1	12Q	1	Ligand/Ion	1-METHYLQUINOLIN-2(1H)-ONE
2	EDO	15	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 36)

No.	Name	Count	Type	Full Name
1	12Q	2	Ligand/Ion	1-METHYLQUINOLIN-2(1H)-ONE
2	EDO	30	Ligand/Ion	1,2-ETHANEDIOL
3	SO4	4	Ligand/Ion	SULFATE ION

Sites (18, 18)

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:1008 , VAL A:1013 , VAL A:1018 , ASN A:1064 , ILE A:1074 , HOH A:1394 , HOH A:1397	BINDING SITE FOR RESIDUE 12Q A 1201
02	AC2	SOFTWARE	ARG A:987 , ARG A:990 , ARG A:994 , ARG A:1067 , ARG A:1072 , HOH A:1412 , HOH A:1443	BINDING SITE FOR RESIDUE SO4 A 1202
03	AC3	SOFTWARE	LYS A:1042 , HOH A:1373 , HOH A:1438 , HOH A:1458	BINDING SITE FOR RESIDUE SO4 A 1203
04	AC4	SOFTWARE	GLU A:988 , LEU A:1093 , ASP A:1094 , PHE A:1097 , HOH A:1323 , HOH A:1352	BINDING SITE FOR RESIDUE EDO A 1204
05	AC5	SOFTWARE	MET A:980 , GLU A:983 , ASP A:984 , ARG A:987 , ARG A:990 , HOH A:1312 , HOH A:1442 , HOH A:1443	BINDING SITE FOR RESIDUE EDO A 1205
06	AC6	SOFTWARE	LYS A:1004 , EDO A:1216 , HOH A:1314 , HOH A:1375	BINDING SITE FOR RESIDUE EDO A 1206
07	AC7	SOFTWARE	ILE A:1089 , LYS A:1090 , LEU A:1093 , HOH A:1377 , HOH A:1427	BINDING SITE FOR RESIDUE EDO A 1207
08	AC8	SOFTWARE	HIS A:998 , ALA A:1001 , HOH A:1472	BINDING SITE FOR RESIDUE EDO A 1208
09	AC9	SOFTWARE	PRO A:1012 , SER A:1032 , SER A:1033 , SER A:1036 , HOH A:1369 , HOH A:1434	BINDING SITE FOR RESIDUE EDO A 1209
10	BC1	SOFTWARE	HIS A:998 , GLU A:1092 , HOH A:1358 , HOH A:1427	BINDING SITE FOR RESIDUE EDO A 1210
11	BC2	SOFTWARE	ASP A:1039 , LEU A:1040	BINDING SITE FOR RESIDUE EDO A 1211
12	BC3	SOFTWARE	PRO A:1065 , ASP A:1066 , ARG A:1067 , ARG A:1072 , ARG A:1075 , HOH A:1449	BINDING SITE FOR RESIDUE EDO A 1212
13	BC4	SOFTWARE	GLN A:981 , GLU A:982 , THR A:985 , ARG A:1072 , HIS A:1076 , HOH A:1380 , HOH A:1426	BINDING SITE FOR RESIDUE EDO A 1213
14	BC5	SOFTWARE	ARG A:990 , HIS A:1041 , LEU A:1044 , ARG A:1108 , HOH A:1374	BINDING SITE FOR RESIDUE EDO A 1214
15	BC6	SOFTWARE	ASP A:1054 , CYS A:1057 , LEU A:1061 , ARG A:1082 , HOH A:1418	BINDING SITE FOR RESIDUE EDO A 1215
16	BC7	SOFTWARE	ARG A:1077 , EDO A:1206 , HOH A:1311 , HOH A:1316 , HOH A:1395	BINDING SITE FOR RESIDUE EDO A 1216
17	BC8	SOFTWARE	ARG A:1082 , ASP A:1083 , TYR A:1086 , HOH A:1325 , HOH A:1422	BINDING SITE FOR RESIDUE EDO A 1217
18	BC9	SOFTWARE	PRO A:1028 , SER A:1033 , HOH A:1372 , HOH A:1402 , HOH A:1477 , HOH A:1478	BINDING SITE FOR RESIDUE EDO A 1218

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qst A  979 SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 1108
                                   988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108

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Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (14, 14)

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	4qst
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