4QSQ - JenaLib

Title :   STRUCTURE OF THE BROMODOMAIN OF HUMAN ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2 (ATAD2) WITH BOUND DMSO

Authors :   A. Chaikuad, I. Felletar, F. Von Delft, C. H. Arrowsmith, A. M. Edwards C. Bountra, S. Knapp, Structural Genomics Consortium (Sgc)

Date :   06 Jul 14 (Deposition) - 23 Jul 14 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics Consortium (Sgc), Signaling Protein, Bromodomain, Actyl-Lysine Binding, Atpase Family Aaa Domain-Containing Protein 2, Epigenetics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Chaikuad, A. M. Petros, O. Fedorov, J. Xu, S. Knapp
Structure-Based Approaches Towards Identification Of Fragments For The Low-Druggability Atad2 Bromodomain
Medchemcomm V. 5 1843 2014
PubMed: search | Reference-DOI: 10.1039/C4MD00237G

Compounds

Molecule 1 - ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2
	Chains	:	A
	EC Number	:	3.6.1.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21-R3-PRARE2
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	BROMODOMAIN (RESIDUES 981-1108)
	Gene	:	ATAD2, L16, PRO2000
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	AAA NUCLEAR COREGULATOR CANCER-ASSOCIATED PROTEIN, ANCCA

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 15)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:1013 , ASN A:1064 , ILE A:1074 , HOH A:1332	BINDING SITE FOR RESIDUE DMS A 1201
02	AC2	SOFTWARE	GLU A:988 , GLU A:1092 , ASP A:1094 , HOH A:1433	BINDING SITE FOR RESIDUE DMS A 1202
03	AC3	SOFTWARE	ARG A:987 , ARG A:990 , ARG A:994 , ARG A:1067 , ARG A:1072 , HOH A:1352 , HOH A:1404 , HOH A:1477	BINDING SITE FOR RESIDUE SO4 A 1203
04	AC4	SOFTWARE	LYS A:1047 , ARG A:1051 , TYR A:1086 , EDO A:1210 , HOH A:1437	BINDING SITE FOR RESIDUE EDO A 1204
05	AC5	SOFTWARE	HIS A:998 , GLU A:1091 , GLU A:1092	BINDING SITE FOR RESIDUE EDO A 1205
06	AC6	SOFTWARE	ILE A:1088 , GLU A:1091 , HOH A:1450	BINDING SITE FOR RESIDUE EDO A 1206
07	AC7	SOFTWARE	PRO A:1028 , SER A:1033 , EDO A:1209 , HOH A:1331	BINDING SITE FOR RESIDUE EDO A 1207
08	AC8	SOFTWARE	THR A:1010 , LYS A:1011 , SER A:1032	BINDING SITE FOR RESIDUE EDO A 1208
09	AC9	SOFTWARE	LEU A:1040 , EDO A:1207 , HOH A:1457	BINDING SITE FOR RESIDUE EDO A 1209
10	BC1	SOFTWARE	VAL A:1046 , EDO A:1204 , HOH A:1435	BINDING SITE FOR RESIDUE EDO A 1210
11	BC2	SOFTWARE	ARG A:1082 , ASP A:1083	BINDING SITE FOR RESIDUE EDO A 1211
12	BC3	SOFTWARE	ARG A:1077 , HOH A:1321 , HOH A:1355 , HOH A:1489	BINDING SITE FOR RESIDUE EDO A 1212
13	BC4	SOFTWARE	ASN A:1064 , GLY A:1070 , ASP A:1071 , HOH A:1473	BINDING SITE FOR RESIDUE EDO A 1213
14	BC5	SOFTWARE	LYS A:1042 , HOH A:1518	BINDING SITE FOR RESIDUE EDO A 1214
15	BC6	SOFTWARE	ASP A:1054 , CYS A:1057 , SER A:1058 , ARG A:1082 , HOH A:1429	BINDING SITE FOR RESIDUE EDO A 1215

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qsq A  979 SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 1108
                                   988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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	4qsq
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