Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF DIHYDROXYBENZOIC ACID DECARBBOXYLASE BPRO_2061 (TARGET EFI-500288) FROM POLAROMONAS SP. JS666 WITH BOUND MANGANESE AND AN INHIBITOR, 2-NITRORESORCINOL
 
Authors :  Y. Patskovsky, A. Vladimirova, R. Toro, R. Bhosle, J. A. Gerlt, M. Raush S. C. Almo
Date :  01 Jul 14  (Deposition) - 06 Aug 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Enzyme Function Initiative, Efi, Hydrolase, Decarboxylase, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, A. Vladimirova, R. Toro, R. Bhosle, F. M. Raushel, S. C. Almo
Crystal Structure Of Dihydroxybenzoate Decarboxylase From Frompolaromonas Sp With Bound Manganese And 2-Nitroresorcinol
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GAMMA-RESORCYLATE DECARBOXYLASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Gene: BPRO_2061
    Organism Scientific: POLAROMONAS
    Organism Taxid: 296591
    Strain: JS666 / ATCC BAA-500

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 34)

Asymmetric Unit (5, 34)
No.NameCountTypeFull Name
138L8Ligand/Ion2-NITROBENZENE-1,3-DIOL
2ACT11Ligand/IonACETATE ION
3BCT1Ligand/IonBICARBONATE ION
4GOL6Ligand/IonGLYCEROL
5MN8Ligand/IonMANGANESE (II) ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
138L2Ligand/Ion2-NITROBENZENE-1,3-DIOL
2ACT2Ligand/IonACETATE ION
3BCT-1Ligand/IonBICARBONATE ION
4GOL3Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
138L2Ligand/Ion2-NITROBENZENE-1,3-DIOL
2ACT3Ligand/IonACETATE ION
3BCT-1Ligand/IonBICARBONATE ION
4GOL1Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
138L2Ligand/Ion2-NITROBENZENE-1,3-DIOL
2ACT3Ligand/IonACETATE ION
3BCT-1Ligand/IonBICARBONATE ION
4GOL1Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 4 (4, 7)
No.NameCountTypeFull Name
138L2Ligand/Ion2-NITROBENZENE-1,3-DIOL
2ACT3Ligand/IonACETATE ION
3BCT1Ligand/IonBICARBONATE ION
4GOL1Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:54 , PRO A:92 , THR A:93 , ARG A:94 , PHE A:95 , ARG A:96 , LEU A:324 , ASN A:329BINDING SITE FOR RESIDUE GOL A 401
02AC2SOFTWARETHR A:267 , TRP A:299 , ASN A:302 , THR A:303 , SER A:304 , HOH A:517 , HOH A:531 , HOH A:569 , HOH A:614 , HOH A:782 , THR D:267 , TRP D:299 , ASN D:302 , THR D:303 , SER D:304 , HOH D:518BINDING SITE FOR RESIDUE GOL A 402
03AC3SOFTWAREGLU A:8 , HIS A:10 , HIS A:164 , ASP A:287 , 38L A:405BINDING SITE FOR RESIDUE MN A 403
04AC4SOFTWARETRP A:288 , ASN A:292 , ILE A:293 , ASP A:294 , HOH A:783BINDING SITE FOR RESIDUE ACT A 404
05AC5SOFTWAREGLU A:8 , HIS A:10 , HIS A:164 , PRO A:185 , HIS A:218 , ASP A:287 , PHE A:290 , MN A:403 , HOH A:556 , HOH A:604 , ARG B:229 , ASN B:234BINDING SITE FOR RESIDUE 38L A 405
06AC6SOFTWARETHR B:267 , TRP B:299 , SER B:304 , HOH B:515 , HOH B:521 , HOH B:550 , HOH B:708 , THR C:267 , TRP C:299 , SER C:304BINDING SITE FOR RESIDUE GOL B 401
07AC7SOFTWAREGLU B:8 , HIS B:10 , HIS B:164 , ASP B:287 , 38L B:404BINDING SITE FOR RESIDUE MN B 402
08AC8SOFTWARETRP B:288 , ASN B:292 , ILE B:293 , ASP B:294 , HOH B:501BINDING SITE FOR RESIDUE ACT B 403
09AC9SOFTWAREARG A:229 , ASN A:234 , GLU B:8 , HIS B:10 , HIS B:164 , PRO B:185 , PHE B:189 , HIS B:218 , ASP B:287 , PHE B:290 , MN B:402 , HOH B:520 , HOH B:562BINDING SITE FOR RESIDUE 38L B 404
10BC1SOFTWAREGLY C:3 , MET C:47 , ASP C:48 , ILE C:52 , GLU C:53 , ARG C:94BINDING SITE FOR RESIDUE GOL C 401
11BC2SOFTWAREGLU C:8 , HIS C:10 , HIS C:164 , ASP C:287 , 38L C:405BINDING SITE FOR RESIDUE MN C 402
12BC3SOFTWAREARG C:42 , LEU C:46 , TRP C:288 , ASN C:292 , ILE C:293 , ASP C:294BINDING SITE FOR RESIDUE ACT C 403
13BC4SOFTWARELEU C:37 , ILE C:39 , GLN C:40 , GLN C:87 , HOH C:586BINDING SITE FOR RESIDUE ACT C 404
14BC5SOFTWAREGLU C:8 , HIS C:10 , HIS C:164 , PRO C:185 , HIS C:218 , ASP C:287 , PHE C:290 , MN C:402 , HOH C:519 , HOH C:570 , ARG D:229 , ASN D:234BINDING SITE FOR RESIDUE 38L C 405
15BC6SOFTWAREGLU D:8 , HIS D:10 , HIS D:164 , ASP D:287 , 38L D:403BINDING SITE FOR RESIDUE MN D 401
16BC7SOFTWARELEU D:46 , TRP D:288 , ASN D:292 , ILE D:293 , ASP D:294 , HOH D:689BINDING SITE FOR RESIDUE ACT D 402
17BC8SOFTWAREARG C:229 , ASN C:234 , GLU D:8 , HIS D:10 , HIS D:164 , PRO D:185 , HIS D:218 , ASP D:287 , PHE D:290 , MN D:401 , HOH D:582 , HOH D:616BINDING SITE FOR RESIDUE 38L D 403
18BC9SOFTWAREGLU E:8 , HIS E:10 , HIS E:164 , ASP E:287 , 38L E:404BINDING SITE FOR RESIDUE MN E 401
19CC1SOFTWARELEU E:46 , ASN E:292 , ILE E:293 , ASP E:294 , HOH E:731BINDING SITE FOR RESIDUE ACT E 402
20CC2SOFTWAREASP E:172 , TYR E:176 , GLN E:191 , HOH E:616 , GLN F:191 , HOH F:605BINDING SITE FOR RESIDUE ACT E 403
21CC3SOFTWAREGLU E:8 , HIS E:10 , HIS E:164 , PRO E:185 , HIS E:218 , ASP E:287 , PHE E:290 , MN E:401 , HOH E:583 , HOH E:584 , ARG F:229 , ASN F:234BINDING SITE FOR RESIDUE 38L E 404
22CC4SOFTWARETHR F:267 , TRP F:299 , ASN F:302 , THR F:303 , SER F:304 , HOH F:506 , HOH F:510 , HOH F:524 , HOH F:581 , THR G:267 , TRP G:299 , ASN G:302 , THR G:303 , SER G:304 , HOH G:537BINDING SITE FOR RESIDUE GOL F 401
23CC5SOFTWAREGLU F:8 , HIS F:10 , HIS F:164 , ASP F:287 , 38L F:404BINDING SITE FOR RESIDUE MN F 402
24CC6SOFTWARELEU F:46 , ASN F:292 , ILE F:293 , ASP F:294 , HOH F:763BINDING SITE FOR RESIDUE ACT F 403
25CC7SOFTWAREARG E:229 , ASN E:234 , GLU F:8 , HIS F:10 , HIS F:164 , PRO F:185 , HIS F:218 , ASP F:287 , PHE F:290 , MN F:402 , HOH F:543 , HOH F:582BINDING SITE FOR RESIDUE 38L F 404
26CC8SOFTWAREGLU G:8 , HIS G:10 , HIS G:164 , ASP G:287 , 38L G:403BINDING SITE FOR RESIDUE MN G 401
27CC9SOFTWARELEU G:46 , ASN G:292 , ILE G:293 , ASP G:294 , HOH G:762BINDING SITE FOR RESIDUE ACT G 402
28DC1SOFTWAREGLU G:8 , HIS G:10 , HIS G:164 , PRO G:185 , HIS G:218 , ASP G:287 , PHE G:290 , MN G:401 , HOH G:516 , HOH G:735 , ARG H:229 , ASN H:234BINDING SITE FOR RESIDUE 38L G 403
29DC2SOFTWAREASP G:172 , GLN G:191 , HOH G:575 , GLN H:191 , HOH H:588 , HOH H:775BINDING SITE FOR RESIDUE BCT G 404
30DC3SOFTWARETHR E:267 , TRP E:299 , ASN E:302 , SER E:304 , THR H:267 , TRP H:299 , ASN H:302 , THR H:303 , SER H:304 , HOH H:510 , HOH H:540 , HOH H:541 , HOH H:553 , HOH H:576 , HOH H:783BINDING SITE FOR RESIDUE GOL H 401
31DC4SOFTWAREGLU H:8 , HIS H:10 , HIS H:164 , ASP H:287 , 38L H:405BINDING SITE FOR RESIDUE MN H 402
32DC5SOFTWAREASN H:292 , ILE H:293 , ASP H:294 , HOH H:501BINDING SITE FOR RESIDUE ACT H 403
33DC6SOFTWAREARG G:174 , PRO H:139 , SER H:171 , ASP H:172 , HOH H:773BINDING SITE FOR RESIDUE ACT H 404
34DC7SOFTWAREARG G:229 , ASN G:234 , GLU H:8 , HIS H:10 , HIS H:164 , PRO H:185 , HIS H:218 , ASP H:287 , PHE H:290 , MN H:402 , HOH H:595 , HOH H:608BINDING SITE FOR RESIDUE 38L H 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QRO)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ala A:61 -Pro A:62
2Trp A:288 -Pro A:289
3Ala B:61 -Pro B:62
4Trp B:288 -Pro B:289
5Ala C:61 -Pro C:62
6Trp C:288 -Pro C:289
7Ala D:61 -Pro D:62
8Trp D:288 -Pro D:289
9Ala E:61 -Pro E:62
10Trp E:288 -Pro E:289
11Ala F:61 -Pro F:62
12Trp F:288 -Pro F:289
13Ala G:61 -Pro G:62
14Trp G:288 -Pro G:289
15Ala H:61 -Pro H:62
16Trp H:288 -Pro H:289

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QRO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QRO)

(-) Exons   (0, 0)

(no "Exon" information available for 4QRO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qro A   1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNRAENLYF 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330  


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhheeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhh..hhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qro B   1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    


Chain C from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qro C   1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLN 325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     


Chain D from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhh..hhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qro D   2 NGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321   


Chain E from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qro E   2 NGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLN 325
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321    


Chain F from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhh..hhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qro F   1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    


Chain G from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qro G   1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLLYF 332
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320   ||  
                                                                                                                                                                                                                                                                                                                                                             324|  
                                                                                                                                                                                                                                                                                                                                                              330  


Chain H from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee...............hhhhhhhhhhhhhhh..eeee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhh..............hhhhhhhhheeee.....hhhhhhhhhhhhhhh.ee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qro H   1 MNGKIALEEHFATEETLMDSAGFVPDKDWPELRSRLLDIQDRRVRLMDEHGIETMILSLNAPAVQAIADSTRANETARRANDFLAEQVAKQPTRFRGFAALPMQDPELAARELERCVKELGFVGALVNGFSQDNRSAVPLYYDMAQYWPFWETVQALDVPFYLHPRNPLPSDARIYDGHAWLLGPTWAFGQETAVHALRLMGSGLFDKYPALKIILGHMGEGLPYSMWRIDHRNAWIKTTPKYPAKRKIVDYFNENFYLTTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKL 324
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QRO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QRO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QRO)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    38L  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BCT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:61 - Pro A:62   [ RasMol ]  
    Ala B:61 - Pro B:62   [ RasMol ]  
    Ala C:61 - Pro C:62   [ RasMol ]  
    Ala D:61 - Pro D:62   [ RasMol ]  
    Ala E:61 - Pro E:62   [ RasMol ]  
    Ala F:61 - Pro F:62   [ RasMol ]  
    Ala G:61 - Pro G:62   [ RasMol ]  
    Ala H:61 - Pro H:62   [ RasMol ]  
    Trp A:288 - Pro A:289   [ RasMol ]  
    Trp B:288 - Pro B:289   [ RasMol ]  
    Trp C:288 - Pro C:289   [ RasMol ]  
    Trp D:288 - Pro D:289   [ RasMol ]  
    Trp E:288 - Pro E:289   [ RasMol ]  
    Trp F:288 - Pro F:289   [ RasMol ]  
    Trp G:288 - Pro G:289   [ RasMol ]  
    Trp H:288 - Pro H:289   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4qro
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q12BV1_POLSJ | Q12BV1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q12BV1_POLSJ | Q12BV1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q12BV1_POLSJ | Q12BV1: 3s4t

(-) Related Entries Specified in the PDB File

3s4t WITHOUT METAL