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4QRO
Biol. Unit 4
Info
Asym.Unit (488 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (123 KB)
Biol.Unit 3 (126 KB)
Biol.Unit 4 (127 KB)
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Title
:
CRYSTAL STRUCTURE OF DIHYDROXYBENZOIC ACID DECARBBOXYLASE BPRO_2061 (TARGET EFI-500288) FROM POLAROMONAS SP. JS666 WITH BOUND MANGANESE AND AN INHIBITOR, 2-NITRORESORCINOL
Authors
:
Y. Patskovsky, A. Vladimirova, R. Toro, R. Bhosle, J. A. Gerlt, M. Raush S. C. Almo
Date
:
01 Jul 14 (Deposition) - 06 Aug 14 (Release) - 06 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Enzyme Function Initiative, Efi, Hydrolase, Decarboxylase, Hydrolase- Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, A. Vladimirova, R. Toro, R. Bhosle, F. M. Raushel, S. C. Almo
Crystal Structure Of Dihydroxybenzoate Decarboxylase From Frompolaromonas Sp With Bound Manganese And 2-Nitroresorcinol
To Be Published
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: 2-NITROBENZENE-1,3-DIOL (38La)
1b: 2-NITROBENZENE-1,3-DIOL (38Lb)
1c: 2-NITROBENZENE-1,3-DIOL (38Lc)
1d: 2-NITROBENZENE-1,3-DIOL (38Ld)
1e: 2-NITROBENZENE-1,3-DIOL (38Le)
1f: 2-NITROBENZENE-1,3-DIOL (38Lf)
1g: 2-NITROBENZENE-1,3-DIOL (38Lg)
1h: 2-NITROBENZENE-1,3-DIOL (38Lh)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
2k: ACETATE ION (ACTk)
3a: BICARBONATE ION (BCTa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
5d: MANGANESE (II) ION (MNd)
5e: MANGANESE (II) ION (MNe)
5f: MANGANESE (II) ION (MNf)
5g: MANGANESE (II) ION (MNg)
5h: MANGANESE (II) ION (MNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
38L
2
Ligand/Ion
2-NITROBENZENE-1,3-DIOL
2
ACT
3
Ligand/Ion
ACETATE ION
3
BCT
1
Ligand/Ion
BICARBONATE ION
4
GOL
1
Ligand/Ion
GLYCEROL
5
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(10, 10)
Info
All Sites
01: CC4 (SOFTWARE)
02: CC8 (SOFTWARE)
03: CC9 (SOFTWARE)
04: DC1 (SOFTWARE)
05: DC2 (SOFTWARE)
06: DC3 (SOFTWARE)
07: DC4 (SOFTWARE)
08: DC5 (SOFTWARE)
09: DC6 (SOFTWARE)
10: DC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
CC4
SOFTWARE
THR F:267 , TRP F:299 , ASN F:302 , THR F:303 , SER F:304 , HOH F:506 , HOH F:510 , HOH F:524 , HOH F:581 , THR G:267 , TRP G:299 , ASN G:302 , THR G:303 , SER G:304 , HOH G:537
BINDING SITE FOR RESIDUE GOL F 401
02
CC8
SOFTWARE
GLU G:8 , HIS G:10 , HIS G:164 , ASP G:287 , 38L G:403
BINDING SITE FOR RESIDUE MN G 401
03
CC9
SOFTWARE
LEU G:46 , ASN G:292 , ILE G:293 , ASP G:294 , HOH G:762
BINDING SITE FOR RESIDUE ACT G 402
04
DC1
SOFTWARE
GLU G:8 , HIS G:10 , HIS G:164 , PRO G:185 , HIS G:218 , ASP G:287 , PHE G:290 , MN G:401 , HOH G:516 , HOH G:735 , ARG H:229 , ASN H:234
BINDING SITE FOR RESIDUE 38L G 403
05
DC2
SOFTWARE
ASP G:172 , GLN G:191 , HOH G:575 , GLN H:191 , HOH H:588 , HOH H:775
BINDING SITE FOR RESIDUE BCT G 404
06
DC3
SOFTWARE
THR E:267 , TRP E:299 , ASN E:302 , SER E:304 , THR H:267 , TRP H:299 , ASN H:302 , THR H:303 , SER H:304 , HOH H:510 , HOH H:540 , HOH H:541 , HOH H:553 , HOH H:576 , HOH H:783
BINDING SITE FOR RESIDUE GOL H 401
07
DC4
SOFTWARE
GLU H:8 , HIS H:10 , HIS H:164 , ASP H:287 , 38L H:405
BINDING SITE FOR RESIDUE MN H 402
08
DC5
SOFTWARE
ASN H:292 , ILE H:293 , ASP H:294 , HOH H:501
BINDING SITE FOR RESIDUE ACT H 403
09
DC6
SOFTWARE
ARG G:174 , PRO H:139 , SER H:171 , ASP H:172 , HOH H:773
BINDING SITE FOR RESIDUE ACT H 404
10
DC7
SOFTWARE
ARG G:229 , ASN G:234 , GLU H:8 , HIS H:10 , HIS H:164 , PRO H:185 , HIS H:218 , ASP H:287 , PHE H:290 , MN H:402 , HOH H:595 , HOH H:608
BINDING SITE FOR RESIDUE 38L H 405
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (488 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
Biol.Unit 2 (123 KB)
Header - Biol.Unit 2
Biol.Unit 3 (126 KB)
Header - Biol.Unit 3
Biol.Unit 4 (127 KB)
Header - Biol.Unit 4
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