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(-) Description

Title :  STRUCTURE OF A FRAGMENT OF HUMAN PHOSPHOLIPASE C-BETA3 DELTA472-569, BOUND TO IP3 AND IN COMPLEX WITH GALPHAQ
 
Authors :  A. M. Lyon, J. J. G. Tesmer
Date :  03 Jun 14  (Deposition) - 22 Oct 14  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gtp-Binding Protein Alpha Subunits, Phospholipase C Beta, Ph Domain, Ef Hand, C2 Domain, Tim Barrel Domain, Gtp Hydrolysis, G-Protein Signaling, Lipase, Calcium Binding, Gtp Binding, Phospholipids, Membrane, Signaling Protein-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Lyon, J. A. Begley, T. D. Manett, J. J. Tesmer
Molecular Mechanisms Of Phospholipase C Beta 3 Autoinhibition.
Structure V. 22 1844 2014
PubMed-ID: 25435326  |  Reference-DOI: 10.1016/J.STR.2014.10.008

(-) Compounds

Molecule 1 - GUANINE NUCLEOTIDE-BINDING PROTEIN G(Q) SUBUNIT ALPHA
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASTBAC HTA
    Expression System Taxid: 7111
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 7-359
    Gene: GNAQ
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-Q
 
Molecule 2 - 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE BETA-3
    Chains: B
    EC Number: 3.1.4.11
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASTBACDUAL
    Expression System Taxid: 7111
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 10-891
    Gene: PLCB3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PHOSPHOINOSITIDE PHOSPHOLIPASE C-BETA-3, PHOSPHOLIPASE C- BETA-3, PLC-BETA-3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
1ALF1Ligand/IonTETRAFLUOROALUMINATE ION
2CA1Ligand/IonCALCIUM ION
3GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
4I3P1Ligand/IonD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
5MG1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:49 , SER A:50 , GLY A:51 , LYS A:52 , SER A:53 , THR A:54 , SER A:156 , LEU A:180 , ARG A:181 , VAL A:182 , ARG A:183 , ASN A:274 , LYS A:275 , ASP A:277 , LEU A:278 , CYS A:330 , ALA A:331 , THR A:332 , ALF A:401 , MG A:402 , HOH A:503BINDING SITE FOR RESIDUE GDP A 400
2AC2SOFTWAREGLY A:48 , GLU A:49 , LYS A:52 , ARG A:183 , PRO A:185 , THR A:186 , VAL A:206 , GLY A:208 , GLN A:209 , GDP A:400 , MG A:402 , HOH A:501 , HOH A:503BINDING SITE FOR RESIDUE ALF A 401
3AC3SOFTWARESER A:53 , THR A:186 , GDP A:400 , ALF A:401 , HOH A:503BINDING SITE FOR RESIDUE MG A 402
4AC4SOFTWAREASN B:333 , GLU B:362 , ASP B:364 , GLU B:413 , I3P B:902BINDING SITE FOR RESIDUE CA B 901
5AC5SOFTWAREHIS B:332 , ASN B:333 , GLU B:362 , HIS B:379 , PHE B:412 , GLU B:413 , LYS B:466 , SER B:619 , ARG B:646 , TYR B:648 , CA B:901BINDING SITE FOR RESIDUE I3P B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QJ4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:126 -Pro A:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QJ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QJ4)

(-) Exons   (0, 0)

(no "Exon" information available for 4QJ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhh......eeeeeee....eeeeeee..hhhhhhhhhhhh....eeeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhh........eeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qj4 A  35 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344        


Chain B from PDB  Type:PROTEIN  Length:749
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhheeeee........eeeeeee.....eeeee.....eeeee...eeeeee.hhh....hhhhhhhhh.hhhhh.eeeeee.......eeeeee.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......eehhhhhhhh..hhhhhhhhhhhhh.......eehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhh..............hhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhh.......hhhhhh.......hhh.eeeeee..........ee...hhhhhhhhhh...eeee.ee.........ee.....ee..eehhhhhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhhhh............................eeee.............ee....hhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhheeeee............hhhhhh....eeee.....hhhhhhhhhhhh......eee.hhhhh...................eeeeeeeeeee........eeeeeeee......eeeee.................eeeeee......eeeeeeee....eee..eee......eeeeeeee.....eeeeeeeeeee.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qj4 B  12 QLEPPTVVETLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRTGRYARLPKDPKIREVLGDARLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMNILAQNASRNTFLRKAYTKLKLQVNQDGRIPVKNILKMFSADKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCLRPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDLMGRILVKNKKREMSTLVNYIEPVKFKSFEAARKRNKCFEMSSFVETKAMEQLTKSPMEFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGGKFVGHRILPVSAIRSGYHYVCLRNEANQPLCLPALLIYTEASDYIPDDHQDYAEALINPIKHVSLMDQRARQLAALIGE 882
                                    21        31        41        51        61        71        81        91|      105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465    || 593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873         
                                                                                                          91|                                                                                                                                                                                                                                                                                                                                                                                   470|                                                                                                                                                                                                                                                                                                     
                                                                                                           96                                                                                                                                                                                                                                                                                                                                                                                    589
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QJ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QJ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QJ4)

(-) Gene Ontology  (60, 64)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asn A:126 - Pro A:127   [ RasMol ]  
 

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  PLCB3_HUMAN | Q01970
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GNAQ_MOUSE | P21279: 2bcj 2rgn 3ah8 3ohm 4ekc 4ekd 4gnk 4qj3 4qj5 5do9
        PLCB3_HUMAN | Q01970: 3ohm 4gnk 4qj3 4qj5

(-) Related Entries Specified in the PDB File

4qj3 4qj5