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(-) Description

Title :  HUMAN ALDOSE REDUCTASE COMPLEXED WITH A LIGAND WITH AN IDD STRUCTURE ({5-FLUORO-2-[(3-NITROBENZYL)CARBAMOYL]PHENOXY}ACETIC ACID) AT 0.98 A
 
Authors :  C. Rechlin, A. Heine, G. Klebe
Date :  09 May 14  (Deposition) - 22 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Oxidoreductase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Rechlin, F. Scheer, P. Toth, A. Heine, W. Diederich, G. Klebe
Aldose Reductase: How Expensive Is The Opening Of The Specificity Pocket? Idd Ligands Under Investigation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALDOSE REDUCTASE
    ChainsA
    EC Number1.1.1.21
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21 GOLD
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneAKR1B1, ALDR1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAR, ALDEHYDE REDUCTASE, ALDO-KETO REDUCTASE FAMILY 1 MEMBER B1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
130L1Ligand/Ion{5-FLUORO-2-[(3-NITROBENZYL)CARBAMOYL]PHENOXY}ACETICACID
2CIT1Ligand/IonCITRIC ACID
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:18 , THR A:19 , TRP A:20 , LYS A:21 , ASP A:43 , TYR A:48 , HIS A:110 , TRP A:111 , SER A:159 , ASN A:160 , GLN A:183 , TYR A:209 , SER A:210 , PRO A:211 , LEU A:212 , GLY A:213 , SER A:214 , PRO A:215 , ASP A:216 , ALA A:245 , ILE A:260 , PRO A:261 , LYS A:262 , SER A:263 , VAL A:264 , THR A:265 , ARG A:268 , GLU A:271 , ASN A:272 , 30L A:402 , HOH A:760 , HOH A:761 , HOH A:777BINDING SITE FOR RESIDUE NAP A 401
2AC2SOFTWARETRP A:20 , VAL A:47 , TYR A:48 , HIS A:110 , TRP A:111 , LEU A:300 , CYS A:303 , TYR A:309 , NAP A:401 , HOH A:792BINDING SITE FOR RESIDUE 30L A 402
3AC3SOFTWAREGLN A:49 , ASN A:50 , GLU A:51 , ASN A:52 , GLU A:53 , LYS A:94 , ASP A:98 , HOH A:735 , HOH A:739BINDING SITE FOR RESIDUE CIT A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QBX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QBX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QBX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QBX)

(-) Exons   (0, 0)

(no "Exon" information available for 4QBX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee...ee....hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeee..........................hhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qbx A   0 MASRILLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF 315
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QBX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QBX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QBX)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALDR_HUMAN | P151211abn 1ads 1az1 1az2 1ef3 1el3 1iei 1mar 1pwl 1pwm 1t40 1t41 1us0 1x96 1x97 1x98 1xgd 1z3n 1z89 1z8a 2acq 2acr 2acs 2acu 2agt 2dux 2duz 2dv0 2f2k 2fz8 2fz9 2fzb 2fzd 2hv5 2hvn 2hvo 2i16 2i17 2ikg 2ikh 2iki 2ikj 2ine 2inz 2ipw 2iq0 2iqd 2is7 2isf 2j8t 2nvc 2nvd 2pd5 2pd9 2pdb 2pdc 2pdf 2pdg 2pdh 2pdi 2pdj 2pdk 2pdl 2pdm 2pdn 2pdp 2pdq 2pdu 2pdw 2pdx 2pdy 2pev 2pf8 2pfh 2pzn 2qxw 2r24 3bcj 3dn5 3g5e 3ghr 3ghs 3ght 3ghu 3lbo 3ld5 3len 3lep 3lqg 3lql 3lz3 3lz5 3m0i 3m4h 3m64 3mb9 3mc5 3onb 3onc 3p2v 3q65 3q67 3rx2 3rx3 3rx4 3s3g 3t42 3u2c 3v35 3v36 4gca 4gq0 4igs 4jir 4lau 4laz 4lb3 4lb4 4lbr 4lbs 4nkc 4pr4 4prr 4prt 4puu 4puw 4q7b 4qr6 4qx4 4qxi 4rpq 4xzh 4xzi 4ys1 4yu1 5ha7

(-) Related Entries Specified in the PDB File

1us0 ALDOSE REDUCTASE WITH AN INHIBITOR WITH AN IDD STRUCTURE
4puu ALDOSE REDUCTASE WITH AN INHIBITOR WITH AN IDD STRUCTURE
4puw ALDOSE REDUCTASE WITH AN INHIBITOR WITH AN IDD STRUCTURE
4q7b ALDOSE REDUCTASE WITH AN INHIBITOR WITH AN IDD STRUCTURE