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(-) Description

Title :  G PROTEIN-COUPLED RECEPTOR KINASE 2 IN COMPLEX WITH GSK180736A
 
Authors :  K. T. Homan, K. M. Larimore, J. Elkins, S. Knapp, J. J. G. Tesmer
Date :  23 May 14  (Deposition) - 08 Oct 14  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym./Biol. Unit :  A,B,G
Keywords :  Protein Kinase, Hydrolase, Atp Binding, Phosphorylation, Peripheral Membrane Protein, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. T. Homan, K. M. Larimore, J. M. Elkins, M. Szklarz, S. Knapp, J. J. Tesmer
Identification And Structure-Function Analysis Of Subfamily Selective G Protein-Coupled Receptor Kinase Inhibitors.
Acs Chem. Biol. V. 10 310 2015
PubMed-ID: 25238254  |  Reference-DOI: 10.1021/CB5006323

(-) Compounds

Molecule 1 - BETA-ADRENERGIC RECEPTOR KINASE 1
    Chains: A
    EC Number: 2.7.11.15
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: ADRBK1, BARK, BARK1, GRK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BETA-ARK-1,G-PROTEIN COUPLED RECEPTOR KINASE 2
 
Molecule 2 - GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT BETA-1
    Chains: B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: GNB1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANSDUCIN BETA CHAIN 1
 
Molecule 3 - GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT GAMMA-2
    Chains: G
    Engineered: YES
    Expression System: TRIOCEROS CRISTATUS
    Expression System Taxid: 179909
    Gene: GNG2
    Mutation: YES
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: G GAMMA-I

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1KZQ1Ligand/Ion(4S)-4-(4-FLUOROPHENYL)-N-(2H-INDAZOL-5-YL)-6-METHYL-2-OXO-1,2,3,4-TETRAHYDROPYRIMIDINE-5-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:197 , GLY A:198 , ARG A:199 , GLY A:200 , VAL A:205 , ALA A:218 , LEU A:222 , ASP A:272 , MET A:274 , ALA A:321 , ASN A:322 , LEU A:324 , SER A:334binding site for residue KZQ A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PNK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PNK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PNK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PNK)

(-) Exons   (0, 0)

(no "Exon" information available for 4PNK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:625
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeeeeeeee..eeeeeeee.....eeeeeeeehhhhhh..hhhhhhhhhhhhhhhh.........eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee................hhhhhh......hhhhhhhhhhhhhhhhhh............hhhhhh............hhhhhhhhhhhh..hhhhh.......hhhhhh.......hhhhhhh.....................hhhhhh......eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeee.hhhhh.eeeeeeee...eeeee.......eeee...eeeeeeeee..eeeeeeee...eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pnk A  30 KKILLPEPSIRSVMQKYLEDRGEVTFEKIFSQKLGYLLFRDFCLNHLEEARPLVEFYEEIKKYEKLETEEERVARSREIFDSYIMKELLACSHPFSKSATEHVQGHLGKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPREVNATKGIKLLDSDQELYRNFPLTISERWQQEVAETVFDTINAETDRLEARKKAKNKQLGHEEDYALGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVEETQIKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYREAQQLVQRVPKMKNKP 668
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    || 493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      474|  ||                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       476  ||                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          479|                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           493                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh....hhhhhh............eeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee.........eeeeee.....eeeeeeee..eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee....eeeee....eeeeee........eeeeee.....eeeeee....eeeee.....eeeee......eeeeee......eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pnk B   2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331         


Chain G from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......hhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 4pnk G   7 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFS  68
                                    16        26        36        46        56        66
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PNK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PNK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PNK)

(-) Gene Ontology  (69, 88)

Asymmetric/Biological Unit(hide GO term definitions)

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  GBB1_HUMAN | P62873
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  GBG2_BOVIN | P63212
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  2.7.11.15
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARBK1_HUMAN | P25098: 1bak 3cik 3krw 3krx 3v5w 4mk0 5he1 5ukk 5ukl
        GBB1_HUMAN | P62873: 1a0r 1tbg 4kfm 5he0 5he1 5he2 5he3 5ukk 5ukl 5ukm 5uz7
        GBG2_BOVIN | P63212: 1gg2 1gp2 1omw 1xhm 2bcj 3ah8 3cik 3krw 3krx 3psc 3pvu 3pvw 3sn6 3uzs 3v5w 4mk0 5tdh 5vai

(-) Related Entries Specified in the PDB File

3v5w SAME PROTEIN IN COMPLEX WITH PAROXETINE
4mk0 SAME PROTEIN IN COMPLEX WITH A RATIONALLY DESIGNED PAROXETINE DERIVATIVE
4pni