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(-) Description

Title :  SIGNAL TRANSDUCTION PLECKSTRIN HOMOLOGY DOMAIN OF G-PROTEIN COUPLED RECEPTOR KINASE 2 (BETA-ADRENERGIC RECEPTOR KINASE 1), C-TERMINAL EXTENDED, NMR, 20 STRUCTURES
 
Authors :  D. Fushman, D. Cowburn
Date :  21 Nov 97  (Deposition) - 25 Feb 98  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Pleckstrin Homology Domain, Ph Domain, Signal Transduction, G-Beta-Gamma Binding Domain, Beta-Adrenergic Receptor Kinase, Beta-Ark, G-Protein Coupled Receptor Kinase (Grk-2), Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Fushman, T. Najmabadi-Haske, S. Cahill, J. Zheng, H. Levine 3Rd. , D. Cowburn
The Solution Structure And Dynamics Of The Pleckstrin Homology Domain Of G Protein-Coupled Receptor Kinase 2 (Beta-Adrenergic Receptor Kinase 1). A Binding Partner Of Gbetagamma Subunits.
J. Biol. Chem. V. 273 2835 1998
PubMed-ID: 9446593  |  Reference-DOI: 10.1074/JBC.273.5.2835
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - G-PROTEIN COUPLED RECEPTOR KINASE 2
    ChainsA
    EC Number2.7.1.126
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentC-TERMINAL EXTENDED PLECKSTRIN HOMOLOGY DOMAIN
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGRK-2, BETA-ADRENERGIC RECEPTOR KINASE 1, BETA- ARK 1

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BAK)

(-) Sites  (0, 0)

(no "Site" information available for 1BAK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BAK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BAK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

NMR Structure (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_040379R578QARBK1_HUMANUnclassified  ---AR578Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PH_DOMAINPS50003 PH domain profile.ARBK1_HUMAN558-652  1A:558-652

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003085951aENSE00001356365chr11:67033881-67034283403ARBK1_HUMAN1-38380--
1.3bENST000003085953bENSE00001327605chr11:67044743-6704481977ARBK1_HUMAN38-64270--
1.4ENST000003085954ENSE00001186794chr11:67046671-6704674474ARBK1_HUMAN64-88250--
1.5aENST000003085955aENSE00001186790chr11:67046889-67046990102ARBK1_HUMAN89-122340--
1.6ENST000003085956ENSE00001186784chr11:67047097-6704717175ARBK1_HUMAN123-147250--
1.7ENST000003085957ENSE00001186778chr11:67047310-6704737162ARBK1_HUMAN148-168210--
1.8bENST000003085958bENSE00001186774chr11:67048203-6704825452ARBK1_HUMAN168-185180--
1.8dENST000003085958dENSE00001186767chr11:67048564-6704865592ARBK1_HUMAN186-216310--
1.9aENST000003085959aENSE00001186763chr11:67048930-67049029100ARBK1_HUMAN216-249340--
1.10aENST0000030859510aENSE00001618837chr11:67049121-6704919979ARBK1_HUMAN250-276270--
1.11aENST0000030859511aENSE00001186756chr11:67049293-67049423131ARBK1_HUMAN276-319440--
1.11fENST0000030859511fENSE00001186750chr11:67049742-6704983695ARBK1_HUMAN320-351320--
1.11iENST0000030859511iENSE00001186745chr11:67049906-67050013108ARBK1_HUMAN351-387370--
1.12aENST0000030859512aENSE00001186741chr11:67050223-6705028967ARBK1_HUMAN387-409230--
1.13aENST0000030859513aENSE00001186735chr11:67050599-67050699101ARBK1_HUMAN410-443340--
1.13eENST0000030859513eENSE00001186730chr11:67051178-6705124467ARBK1_HUMAN443-465230--
1.13gENST0000030859513gENSE00001186725chr11:67051325-6705142096ARBK1_HUMAN466-497320--
1.13lENST0000030859513lENSE00001186721chr11:67051682-67051844163ARBK1_HUMAN498-552551A:552-5521
1.14aENST0000030859514aENSE00001186716chr11:67052318-67052454137ARBK1_HUMAN552-597461A:552-59746
1.14dENST0000030859514dENSE00001186711chr11:67052546-67052659114ARBK1_HUMAN598-635381A:598-63538
1.15cENST0000030859515cENSE00002193440chr11:67052757-670540271271ARBK1_HUMAN636-689541A:636-67035

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with ARBK1_HUMAN | P25098 from UniProtKB/Swiss-Prot  Length:689

    Alignment length:119
                                   561       571       581       591       601       611       621       631       641       651       661         
          ARBK1_HUMAN   552 DYALGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVEETQIKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYREAQQLVQRVPKMKNKPRS 670
               SCOP domains d1baka_ A: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)                                      SCOP domains
               CATH domains 1bakA00 A:552-670 Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeee.........eeeeee...eeeee........eee...eeeeeee......eeeeee....eeeee...hhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------Q-------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------PH_DOMAIN  PDB: A:558-652 UniProt: 558-652                                                     ------------------ PROSITE
           Transcript 1 (1) 1---------------------------------------------Exon 1.14d  PDB: A:598-635            Exon 1.15c  PDB: A:636-670          Transcript 1 (1)
           Transcript 1 (2) Exon 1.14a  PDB: A:552-597 UniProt: 552-597   ------------------------------------------------------------------------- Transcript 1 (2)
                 1bak A 552 GSHMGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTMEEIQSVEETQIKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYREAQQLVQRVPKMKNKPRS 670
                                   561       571       581       591       601       611       621       631       641       651       661         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BAK)

(-) Gene Ontology  (33, 33)

NMR Structure(hide GO term definitions)
Chain A   (ARBK1_HUMAN | P25098)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0031755    Edg-2 lysophosphatidic acid receptor binding    Interacting selectively and non-covalently with an Edg-2 lysophosphatidic acid receptor.
    GO:0004703    G-protein coupled receptor kinase activity    Catalysis of the reaction: ATP + G-protein coupled receptor = ADP + G-protein coupled receptor phosphate.
    GO:0031694    alpha-2A adrenergic receptor binding    Interacting selectively and non-covalently with an alpha-2A adrenergic receptor.
    GO:0047696    beta-adrenergic receptor kinase activity    Catalysis of the reaction: ATP + beta-adrenergic receptor = ADP + phospho-beta-adrenergic receptor.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007213    G-protein coupled acetylcholine receptor signaling pathway    Any series of molecular signals initiated by an acetylcholine receptor on the surface of the target cell binding to one of its physiological ligands, and proceeding with the activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction and ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0060048    cardiac muscle contraction    Muscle contraction of cardiac muscle tissue.
    GO:0002029    desensitization of G-protein coupled receptor protein signaling pathway    The process that stops, prevents, or reduces the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity after prolonged stimulation with an agonist of the pathway.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0045988    negative regulation of striated muscle contraction    Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle contraction.
    GO:0003108    negative regulation of the force of heart contraction by chemical signal    Any process which decreases the force of heart muscle contraction mediated by chemical signaling, hormonal, autocrine or paracrine.
    GO:0018105    peptidyl-serine phosphorylation    The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine.
    GO:0018107    peptidyl-threonine phosphorylation    The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0033605    positive regulation of catecholamine secretion    Any process that activates or increases the frequency, rate or extent of the regulated release of a catecholamine.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0031623    receptor internalization    A receptor-mediated endocytosis process that results in the movement of receptors from the plasma membrane to the inside of the cell. The process begins when cell surface receptors are monoubiquitinated following ligand-induced activation. Receptors are subsequently taken up into endocytic vesicles from where they are either targeted to the lysosome or vacuole for degradation or recycled back to the plasma membrane.
    GO:0002026    regulation of the force of heart contraction    Any process that modulates the extent of heart contraction, changing the force with which blood is propelled.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007217    tachykinin receptor signaling pathway    The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019079    viral genome replication    Any process involved directly in viral genome replication, including viral nucleotide metabolism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARBK1_HUMAN | P250983cik 3krw 3krx 3v5w 4mk0 4pnk 5he1 5ukk 5ukl

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